Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 0.0e+00 1726.1 899 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.0e-200 704.5 925 46.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 8.0e-185 651.7 884 47.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 6.7e-184 648.7 923 43.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.0e-179 634.8 901 43.5
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.8e-176 624.0 924 43.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.2e-176 622.5 916 42.8
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 3.4e-175 619.8 907 44.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 3.5e-172 609.8 908 42.8
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 4.5e-172 609.4 925 41.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 3.8e-171 606.3 933 42.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.1e-170 604.7 924 42.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 4.2e-170 602.8 915 42.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 3.6e-169 599.7 915 41.4
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 4.0e-168 596.3 881 43.4
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 6.8e-168 595.5 938 41.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 8.8e-168 595.1 932 42.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 8.8e-168 595.1 928 41.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 8.8e-168 595.1 916 41.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.2e-167 594.7 920 42.3
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-167 594.0 944 42.2
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 5.7e-167 592.4 948 42.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.3e-166 591.3 909 41.0
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.4e-165 587.8 904 41.4
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.4e-165 587.0 926 41.6
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 4.1e-165 586.3 933 41.8
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 7.0e-165 585.5 918 41.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.2e-164 584.7 911 41.3
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.2e-164 584.7 937 40.0
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.0e-164 583.9 904 41.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.0e-163 581.6 912 41.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 3.3e-162 576.6 922 41.0
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 3.3e-162 576.6 998 39.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 5.5e-162 575.9 920 39.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 5.5e-162 575.9 920 40.1
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 9.5e-162 575.1 919 40.6
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 9.5e-162 575.1 923 41.3
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.2e-161 574.7 922 41.1
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 4.7e-161 572.8 930 40.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 4.7e-161 572.8 919 40.6
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 4.7e-161 572.8 921 41.4
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.4e-160 571.2 925 40.3
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 1.8e-160 570.9 919 39.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 4.0e-160 569.7 919 40.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 4.0e-160 569.7 925 40.4
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 8.9e-160 568.5 929 40.3
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-159 567.8 935 40.4
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.3e-158 564.7 938 40.8
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 1.3e-158 564.7 914 40.9
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 4.9e-158 562.8 930 39.8
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 2.4e-157 560.5 872 42.1
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 3.2e-157 560.1 909 40.4
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 4.1e-157 559.7 961 39.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 7.0e-157 558.9 962 39.3
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.2e-156 558.1 909 40.3
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 2.0e-156 557.4 924 39.8
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 3.5e-156 556.6 846 41.7
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 5.0e-155 552.7 911 38.9
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.8e-153 547.0 908 38.8
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 3.6e-153 546.6 909 38.7
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 1.0e-152 545.0 911 38.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.0e-152 545.0 894 39.6
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-152 544.7 902 39.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.8e-152 544.3 919 40.2
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 2.3e-152 543.9 927 40.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 4.0e-152 543.1 911 38.5
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 3.4e-151 540.0 905 38.8
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 4.4e-151 539.7 906 39.4
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.9e-150 536.2 866 40.8
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.9e-149 534.3 908 39.1
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 7.0e-149 532.3 910 38.6
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.6e-148 531.2 913 38.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.0e-148 530.8 931 38.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.0e-147 528.5 989 36.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 6.6e-147 525.8 896 38.5
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 9.5e-146 521.9 917 38.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.2e-145 521.5 910 38.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.1e-144 518.5 914 38.9
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.3e-144 517.3 1014 36.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 2.4e-141 507.3 1075 35.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.4e-141 507.3 1085 35.5
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 4.1e-141 506.5 905 38.1
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.7e-140 503.8 685 45.1
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 3.5e-140 503.4 661 45.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.3e-139 500.7 909 38.3
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.9e-139 500.0 898 38.2
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 3.9e-139 500.0 921 37.5
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 5.6e-138 496.1 661 44.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 7.3e-138 495.7 959 36.6
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 2.3e-136 490.7 954 36.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.9e-134 483.8 941 37.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.6e-131 472.6 881 38.0
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 6.2e-129 466.1 644 43.8
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-127 459.5 591 49.7
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.3e-121 441.8 768 39.7
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.6e-113 413.7 1156 30.4
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.7e-110 404.8 547 45.5
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.7e-107 392.5 532 44.9
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 8.1e-105 386.0 726 36.6
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.7e-102 378.3 553 42.5
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 2.5e-98 364.4 792 34.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 2.2e-94 351.3 433 47.3
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.6e-89 335.1 657 37.4
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.5e-82 312.0 436 42.9
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 7.7e-79 299.7 897 30.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.9e-77 295.0 297 53.5
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.2e-76 292.4 614 35.8
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 7.9e-76 289.7 604 35.8
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 5.7e-74 283.5 582 36.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.3e-70 272.3 279 52.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-69 268.9 476 38.4
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 8.8e-67 259.6 481 37.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 9.8e-58 229.6 239 52.7
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.4e-56 225.7 234 53.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 5.7e-50 203.8 411 37.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.5e-50 203.4 657 28.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 3.6e-44 184.5 276 41.3
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.3e-41 173.3 457 31.9
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.6e-39 169.1 217 45.6
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 4.9e-33 147.5 146 52.1
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.9e-29 135.6 624 25.6
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.4e-27 129.4 323 31.6
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.7e-25 122.5 124 52.4
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 8.3e-25 120.2 970 23.3
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.0e-22 113.2 147 43.5
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 4.9e-17 94.4 102 49.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.8e-15 87.0 118 44.9
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.0e-14 85.1 200 32.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 3.0e-14 85.1 64 62.5
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.3e-13 81.3 146 34.9
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-12 78.6 90 53.3
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.2e-11 74.3 74 44.6
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.5e-10 72.8 85 52.9
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.8e-10 70.9 84 48.8
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 2.1e-07 62.4 462 23.2
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.7e-06 59.3 114 36.0
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 8.7e-06 57.0 77 44.2


User provided reference genes

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