Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 6.2e-279 963.4 453 100.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.5e-213 744.6 446 76.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.6e-210 734.9 450 76.4
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.4e-207 724.2 448 74.6
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 3.2e-206 721.8 448 74.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.2e-206 721.8 450 73.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.7e-205 718.8 448 74.6
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.7e-205 718.8 450 73.3
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 7.8e-205 717.2 451 73.4
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.0e-204 716.8 449 73.9
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.0e-204 716.8 451 72.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.0e-204 715.3 448 73.4
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.0e-204 715.3 452 72.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.9e-204 714.9 452 72.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.9e-204 714.9 451 73.8
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 5.0e-204 714.5 439 74.3
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 6.6e-204 714.1 452 73.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.6e-204 714.1 451 73.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.6e-204 713.8 451 73.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.9e-203 712.6 451 73.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.5e-203 712.2 451 72.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-202 709.1 452 72.1
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.1e-202 709.1 445 73.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.8e-202 708.8 452 72.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 3.6e-202 708.4 448 73.9
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.2e-202 707.6 432 74.5
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-201 706.8 452 72.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.4e-201 706.4 452 72.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.4e-201 706.4 451 72.9
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.4e-201 706.4 451 72.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.4e-201 706.4 448 73.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-201 706.1 462 71.2
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.8e-201 706.1 445 73.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.3e-201 705.7 444 73.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.1e-201 705.3 445 72.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.0e-201 704.9 445 72.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 5.2e-201 704.5 452 73.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.2e-201 704.5 451 72.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 6.8e-201 704.1 445 71.9
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.8e-201 704.1 452 72.3
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.5e-200 703.0 451 72.9
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.6e-200 702.2 452 71.7
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.6e-200 702.2 455 72.5
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.6e-200 702.2 445 72.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.6e-200 702.2 452 72.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.4e-200 701.8 442 72.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 5.8e-200 701.0 446 71.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 7.5e-200 700.7 444 71.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-199 699.9 446 72.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.7e-199 699.5 446 71.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 2.9e-199 698.7 444 72.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.9e-199 698.0 445 73.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 6.4e-199 697.6 442 72.6
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 6.4e-199 697.6 452 71.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-198 696.8 452 72.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.1e-198 696.8 451 72.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-198 696.4 452 71.9
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.9e-198 696.0 452 71.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.9e-198 696.0 452 71.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.9e-198 696.0 447 72.7
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.4e-198 695.7 452 71.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.4e-198 695.7 447 72.5
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 4.1e-198 694.9 442 72.2
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.1e-198 694.9 451 71.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 5.4e-198 694.5 452 71.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 5.4e-198 694.5 452 71.9
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 5.4e-198 694.5 452 71.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 5.4e-198 694.5 445 71.9
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.6e-197 693.0 451 71.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.0e-197 692.6 446 72.2
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.0e-197 692.6 452 71.5
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.7e-197 692.2 451 72.1
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 3.5e-197 691.8 452 71.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 4.6e-197 691.4 446 71.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.6e-197 691.4 444 72.3
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.8e-197 690.6 452 71.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.0e-196 690.3 445 72.1
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.0e-196 690.3 445 72.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.0e-196 690.3 452 71.0
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.0e-196 690.3 452 71.7
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.3e-196 689.9 448 71.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.7e-196 689.5 452 71.2
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.7e-196 689.5 451 71.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 3.9e-196 688.3 444 71.6
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 5.0e-196 688.0 446 70.9
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 8.6e-196 687.2 450 70.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.5e-195 686.4 445 71.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.9e-195 686.0 429 73.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.9e-195 686.0 451 71.6
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.3e-195 684.9 448 71.2
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 7.3e-195 684.1 468 69.0
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 9.5e-195 683.7 447 69.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 2.1e-194 682.6 446 70.6
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.1e-194 682.6 448 71.9
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.8e-193 679.5 450 70.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 8.9e-193 677.2 444 69.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.4e-192 675.2 448 70.1
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.4e-192 674.9 482 66.6
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.2e-191 672.5 497 65.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.1e-190 670.2 452 68.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.4e-190 669.8 452 68.4
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-190 669.8 452 68.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.6e-189 666.4 452 68.4
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.1e-189 666.0 452 68.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.5e-189 665.2 449 70.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 3.9e-188 661.8 452 69.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.2e-186 656.8 452 69.2
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.8e-185 652.9 413 73.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 3.2e-182 642.1 445 67.9
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.7e-181 639.0 452 67.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 3.9e-180 635.2 452 66.4
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-176 623.2 378 76.5
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.6e-173 611.7 389 73.3
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.6e-170 602.1 441 65.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.0e-169 597.4 378 73.3
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 5.8e-168 594.7 456 63.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.4e-158 563.5 457 59.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.5e-152 543.5 333 76.3
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.5e-149 532.3 452 60.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-147 526.2 444 58.6
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.4e-137 493.0 433 59.6
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-134 484.2 298 74.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.0e-132 477.6 299 74.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.1e-132 475.3 452 54.2
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.8e-130 469.5 317 68.1
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.7e-127 460.3 380 58.7
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.2e-118 429.1 289 69.6
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.7e-116 421.8 296 67.6
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.2e-114 416.8 444 50.9
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.8e-88 328.6 281 58.7
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.6e-77 293.1 260 53.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.9e-70 270.8 160 76.2
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 4.3e-70 269.6 194 63.4
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.9e-63 246.5 145 77.2
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.6e-62 242.7 150 72.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-56 224.9 157 67.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 7.8e-56 222.2 154 66.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.0e-55 221.9 140 71.4
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.9e-55 219.9 154 63.6
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 8.7e-55 218.8 196 56.1
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 4.8e-53 213.0 154 65.6
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 8.4e-50 202.2 135 69.6
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 4.6e-40 169.9 112 72.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.8e-39 167.9 135 61.5
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.1e-33 146.0 116 60.3
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-29 134.8 137 51.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.3e-22 110.5 55 85.5
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.2e-17 93.6 73 56.2
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.6e-16 90.5 74 56.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.0e-15 87.4 69 53.6
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.7e-15 86.3 75 53.3
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.7e-15 86.3 67 61.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-13 82.0 78 46.2
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.7e-13 81.6 72 52.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 6.3e-13 79.7 76 51.3
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 2.2e-10 71.2 159 30.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 5.0e-10 70.1 75 42.7
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.2e-09 66.2 64 48.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-08 65.5 48 60.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.6e-08 65.1 47 61.7
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.6e-08 63.9 48 56.2


User provided reference genes

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