Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.6e-95 352.8 184 100.0
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.2e-65 252.7 170 77.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.1e-45 187.2 183 53.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.3e-45 185.7 163 55.8
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 3.1e-43 179.1 176 52.8
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 3.1e-43 179.1 174 52.9
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.9e-43 177.9 176 52.8
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.0e-43 177.6 176 52.8
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 9.0e-43 177.6 170 53.5
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.2e-42 177.2 160 56.9
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.0e-42 176.4 158 56.3
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 2.0e-42 176.4 174 52.9
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.6e-42 176.0 176 52.8
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.4e-42 175.6 174 52.9
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 4.5e-42 175.3 162 55.6
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.8e-42 174.9 163 54.0
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.0e-41 174.1 177 54.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-41 173.7 163 52.8
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.3e-41 173.7 163 54.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.7e-41 173.3 162 55.6
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.2e-41 172.9 171 55.0
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 6.5e-41 171.4 173 52.0
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 8.4e-41 171.0 178 50.6
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.1e-40 170.6 169 50.9
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.1e-40 170.6 161 54.7
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.1e-40 170.6 172 52.3
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.9e-40 169.9 174 50.0
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.9e-40 169.9 174 50.6
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.9e-40 169.9 170 52.9
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.5e-40 169.5 177 50.3
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.5e-40 169.5 173 49.7
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 3.2e-40 169.1 163 53.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 4.2e-40 168.7 178 50.6
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 7.1e-40 167.9 170 51.8
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.1e-40 167.9 177 50.8
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 9.3e-40 167.5 174 50.6
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.6e-39 166.8 160 53.8
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 1.6e-39 166.8 176 50.6
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.6e-39 166.8 183 49.7
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.6e-39 166.8 175 51.4
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.6e-39 166.8 175 50.3
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.6e-39 166.8 172 51.2
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.6e-39 166.8 172 51.2
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 2.1e-39 166.4 169 53.3
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 2.1e-39 166.4 165 51.5
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.1e-39 166.4 174 51.1
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 2.7e-39 166.0 177 50.8
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.7e-39 166.0 171 50.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 6.0e-39 164.9 167 50.3
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 6.0e-39 164.9 180 50.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 6.0e-39 164.9 174 51.1
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 7.9e-39 164.5 178 50.0
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 7.9e-39 164.5 176 49.4
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.9e-39 164.5 167 53.3
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 7.9e-39 164.5 177 49.7
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 7.9e-39 164.5 178 48.9
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 7.9e-39 164.5 167 51.5
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.0e-38 164.1 170 50.6
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.0e-38 164.1 171 49.1
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.0e-38 164.1 185 50.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.3e-38 163.7 176 51.1
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.3e-38 163.7 176 51.1
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.3e-38 163.7 176 49.4
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-38 163.3 169 50.9
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.8e-38 163.3 167 51.5
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.8e-38 163.3 176 51.7
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.8e-38 163.3 174 49.4
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.8e-38 163.3 159 52.2
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.8e-38 163.3 165 52.1
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.3e-38 162.9 167 52.1
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.3e-38 162.9 163 54.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 3.0e-38 162.5 161 52.2
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.9e-38 162.2 171 51.5
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 3.9e-38 162.2 163 51.5
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.9e-38 162.2 163 50.9
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.9e-38 162.2 165 52.1
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 3.9e-38 162.2 174 50.6
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 5.1e-38 161.8 177 48.6
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 5.1e-38 161.8 169 50.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 5.1e-38 161.8 159 51.6
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 6.7e-38 161.4 177 48.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 6.7e-38 161.4 173 50.3
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 8.7e-38 161.0 177 48.0
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 8.7e-38 161.0 167 51.5
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.1e-37 160.6 165 51.5
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.1e-37 160.6 172 50.6
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.5e-37 160.2 177 48.0
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.9e-37 159.8 165 51.5
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.9e-37 159.8 163 53.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.9e-37 159.8 169 49.7
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.9e-37 159.8 154 53.2
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.3e-37 159.1 171 48.5
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 4.3e-37 158.7 134 57.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 7.4e-37 157.9 174 48.3
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 9.6e-37 157.5 167 49.7
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 9.6e-37 157.5 167 48.5
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.1e-36 156.4 165 50.9
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 2.1e-36 156.4 163 49.7
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.7e-36 155.6 157 51.6
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 4.8e-36 155.2 180 45.6
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-35 154.1 161 49.1
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.4e-35 153.7 184 45.7
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.1e-35 152.5 166 49.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.3e-35 151.8 180 48.3
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.9e-35 151.4 180 47.8
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 6.9e-35 151.4 161 49.1
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.0e-34 149.8 166 47.6
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.0e-34 149.8 199 42.7
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 2.6e-34 149.4 178 46.1
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 5.8e-34 148.3 169 47.3
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.9e-33 146.0 134 55.2
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 5.0e-33 145.2 168 47.0
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 6.5e-33 144.8 151 51.7
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 8.4e-33 144.4 176 46.0
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.1e-32 144.1 133 56.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.6e-31 140.2 222 38.3
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.1e-31 139.8 174 43.7
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.1e-31 139.8 194 43.8
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 6.1e-31 138.3 180 45.0
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.0e-30 137.5 163 47.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 7.4e-29 131.3 171 42.7
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.4e-29 131.3 144 47.2
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 9.7e-29 131.0 145 50.3
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 8.2e-28 127.9 171 44.4
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.4e-27 126.3 143 46.9
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.5e-26 123.6 153 44.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.9e-26 121.7 168 42.3
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 5.0e-25 118.6 156 40.4
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.4e-24 117.1 207 39.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.4e-22 110.5 80 66.2
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 3.0e-22 109.4 125 52.8
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.5e-21 106.3 85 61.2
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.3e-21 105.5 78 67.9
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-20 104.0 78 64.1
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.7e-20 103.6 80 62.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 8.2e-20 101.3 78 65.4
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.8e-19 100.1 201 36.8
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 2.4e-19 99.8 125 43.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 3.1e-19 99.4 155 37.4
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 7.7e-18 94.7 77 61.0
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-14 83.6 114 42.1
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.3e-13 79.3 102 45.1
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 4.1e-11 72.4 180 34.4
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 5.3e-11 72.0 175 33.7
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 9.1e-11 71.2 90 42.2
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.6e-10 70.5 76 46.1
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 6.5e-09 65.1 86 38.4


User provided reference genes

Program Settings