Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 6.4e-221 770.4 374 100.0
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.5e-134 481.9 411 62.3
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 4.1e-111 405.6 411 53.3
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 2.1e-107 393.3 411 50.9
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 2.1e-107 393.3 411 51.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 2.1e-107 393.3 411 51.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 2.8e-107 392.9 411 51.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 4.7e-107 392.1 411 51.6
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 4.7e-107 392.1 411 51.3
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 6.2e-107 391.7 411 51.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.1e-106 391.0 410 51.5
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.4e-106 390.6 411 50.9
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.4e-106 390.6 411 51.6
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.8e-106 390.2 411 51.1
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.8e-106 390.2 411 50.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.8e-106 390.2 411 50.6
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.3e-106 389.8 411 51.6
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.1e-106 389.4 411 51.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.1e-106 389.4 411 51.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 5.2e-106 388.7 411 50.4
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 5.2e-106 388.7 410 51.5
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.8e-106 388.3 411 51.6
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 6.8e-106 388.3 412 50.2
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 6.8e-106 388.3 411 51.1
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 8.9e-106 387.9 413 51.6
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 8.9e-106 387.9 411 51.3
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 8.9e-106 387.9 411 50.4
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.2e-105 387.5 412 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.5e-105 387.1 409 52.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.6e-105 386.3 412 51.0
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.4e-105 386.0 411 50.4
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 4.4e-105 385.6 411 50.4
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 4.4e-105 385.6 411 50.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 4.4e-105 385.6 411 50.4
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 5.8e-105 385.2 411 50.9
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.5e-105 384.8 411 50.1
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 9.9e-105 384.4 411 50.4
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 9.9e-105 384.4 411 49.6
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.3e-104 384.0 411 50.9
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.3e-104 384.0 412 51.2
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.3e-104 384.0 411 49.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.7e-104 383.6 411 50.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.2e-104 383.3 412 51.0
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.2e-104 383.3 411 49.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.9e-104 382.9 413 51.3
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.7e-104 382.5 413 51.1
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 3.7e-104 382.5 411 49.9
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 3.7e-104 382.5 411 49.6
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 4.9e-104 382.1 411 49.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 4.9e-104 382.1 412 51.5
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 4.9e-104 382.1 411 50.4
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 6.4e-104 381.7 411 50.1
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.4e-104 381.7 411 49.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.3e-104 381.3 411 49.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 8.3e-104 381.3 411 49.1
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.1e-103 380.9 411 49.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.1e-103 380.9 411 50.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.4e-103 380.6 404 50.5
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.4e-103 380.6 412 51.5
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.9e-103 380.2 411 49.9
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 2.4e-103 379.8 411 50.1
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.4e-103 379.8 411 49.6
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 3.2e-103 379.4 411 49.6
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 4.1e-103 379.0 411 49.4
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 4.1e-103 379.0 412 50.0
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 4.1e-103 379.0 416 50.0
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 4.1e-103 379.0 411 49.6
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 5.4e-103 378.6 413 50.4
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 7.1e-103 378.3 411 49.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 9.2e-103 377.9 411 48.9
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 9.2e-103 377.9 411 48.9
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 9.2e-103 377.9 411 48.9
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.2e-103 377.9 411 49.6
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.2e-103 377.9 418 49.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 9.2e-103 377.9 411 49.4
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.2e-102 377.5 413 50.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.2e-102 377.5 411 48.9
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.2e-102 377.5 407 49.6
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.6e-102 377.1 411 49.1
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.7e-102 376.3 409 49.4
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.5e-102 375.9 413 50.1
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.5e-102 375.9 412 50.7
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 4.6e-102 375.6 411 49.4
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.6e-102 375.6 409 48.7
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.8e-102 374.8 411 48.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 7.8e-102 374.8 412 49.3
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-101 374.4 411 49.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.0e-101 374.4 410 48.5
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.3e-101 374.0 412 49.8
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.3e-101 374.0 410 49.0
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.7e-101 373.6 412 49.3
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.3e-101 373.2 412 49.5
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.3e-101 373.2 411 48.9
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 2.3e-101 373.2 411 49.9
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.3e-101 373.2 411 49.9
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.3e-101 373.2 432 49.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.3e-101 373.2 432 49.3
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 3.0e-101 372.9 409 49.4
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 3.9e-101 372.5 412 49.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 8.6e-101 371.3 411 49.4
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 8.6e-101 371.3 411 48.7
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.9e-100 370.2 411 48.7
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 4.3e-100 369.0 409 50.1
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.6e-100 368.6 412 50.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 7.3e-100 368.2 411 48.7
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 9.5e-100 367.9 411 48.7
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 9.5e-100 367.9 411 48.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 9.5e-100 367.9 411 48.9
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.2e-99 367.5 411 48.9
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.6e-99 367.1 409 48.9
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.4e-98 363.2 406 48.5
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 3.1e-98 362.8 406 48.8
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 4.0e-98 362.5 412 48.8
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 4.0e-98 362.5 406 48.8
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 7.6e-97 358.2 407 48.6
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.2e-95 352.8 435 46.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.4e-90 336.7 412 45.9
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.2e-89 334.3 411 46.2
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.7e-88 330.5 393 47.8
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.7e-88 330.5 558 37.6
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.9e-88 328.9 535 38.9
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.4e-87 327.4 413 44.6
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 4.2e-87 325.9 411 44.0
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.0e-85 321.2 411 44.5
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 5.1e-85 318.9 400 44.2
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.4e-81 306.2 363 46.6
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.3e-80 304.3 332 50.3
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 7.4e-76 288.5 299 51.8
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 4.8e-67 259.2 350 44.6
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 2.9e-64 250.0 345 43.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.1e-63 248.1 271 49.8
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 5.7e-60 235.7 268 47.0
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 5.3e-58 229.2 263 49.4
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 9.4e-55 218.4 184 59.2
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.5e-49 201.1 421 34.9
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 8.5e-40 168.7 160 51.9
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.6e-36 157.1 158 47.5
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 9.4e-31 138.7 131 49.6
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 2.0e-25 120.9 96 58.3
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.8e-18 97.8 87 55.2
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.0e-17 94.4 97 48.5
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 7.7e-17 92.4 72 62.5
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.2e-11 74.3 158 36.7
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.0e-08 65.5 78 47.4
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.1e-07 62.0 48 54.2
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 7.3e-07 59.3 44 59.1
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 2.8e-06 57.4 42 57.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 2.8e-06 57.4 42 57.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.6e-06 57.0 47 59.6
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 4.7e-06 56.6 136 27.9


User provided reference genes

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