Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.5e-121 439.5 221 100.0
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.7e-75 285.4 219 67.1
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.2e-33 147.5 218 41.3
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 2.3e-24 116.7 206 32.5
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 2.3e-24 116.7 215 35.8
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.0e-24 116.3 212 34.4
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 8.6e-24 114.8 200 35.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.1e-23 114.4 198 33.8
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.9e-23 113.6 198 36.4
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 9.5e-23 111.3 218 33.5
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.6e-22 110.5 196 33.2
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.1e-22 110.2 196 32.7
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.2e-22 108.6 197 34.0
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 8.1e-22 108.2 224 35.3
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 8.1e-22 108.2 203 33.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 8.1e-22 108.2 198 35.4
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 8.1e-22 108.2 194 38.7
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.1e-21 107.8 189 32.3
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.4e-21 107.5 196 33.2
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.4e-21 107.5 196 33.2
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.4e-21 107.5 186 37.1
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.4e-21 107.5 194 34.5
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.4e-21 107.5 198 34.3
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-21 107.1 203 31.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 2.3e-21 106.7 197 32.5
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.3e-21 106.7 219 31.1
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.3e-21 106.7 220 33.2
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 4.0e-21 105.9 195 33.3
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.2e-21 105.5 194 32.0
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 5.2e-21 105.5 185 33.0
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 5.2e-21 105.5 186 32.8
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 5.2e-21 105.5 218 32.6
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.8e-21 105.1 185 33.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 6.8e-21 105.1 185 33.0
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 6.8e-21 105.1 197 32.5
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 6.8e-21 105.1 185 33.5
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.9e-21 104.8 199 32.2
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 8.9e-21 104.8 189 32.8
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 8.9e-21 104.8 185 33.5
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 8.9e-21 104.8 211 32.7
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 8.9e-21 104.8 187 38.0
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 8.9e-21 104.8 197 32.5
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.2e-20 104.4 188 34.0
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.2e-20 104.4 209 31.6
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.5e-20 104.0 174 38.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.5e-20 104.0 185 33.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.0e-20 103.6 208 31.2
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 2.6e-20 103.2 203 32.0
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 4.4e-20 102.4 216 30.1
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.4e-20 102.4 186 35.5
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 5.8e-20 102.1 204 33.8
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 7.5e-20 101.7 197 33.0
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 7.5e-20 101.7 197 32.0
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 7.5e-20 101.7 208 30.3
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.8e-20 101.3 217 30.4
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 9.8e-20 101.3 207 31.4
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.3e-19 100.9 195 31.3
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.7e-19 100.5 198 31.3
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.7e-19 100.5 185 31.9
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.7e-19 100.5 182 33.0
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.7e-19 100.5 210 32.4
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.7e-19 100.5 194 32.5
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 3.7e-19 99.4 185 33.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 6.4e-19 98.6 213 32.4
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.4e-19 98.6 186 34.4
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 8.3e-19 98.2 194 31.4
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 8.3e-19 98.2 203 31.0
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.1e-18 97.8 207 31.9
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.1e-18 97.8 206 32.5
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.1e-18 97.8 204 33.3
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.4e-18 97.4 197 33.5
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.4e-18 97.4 185 31.4
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.9e-18 97.1 196 33.7
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.2e-18 96.3 211 28.9
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 4.1e-18 95.9 209 32.1
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 5.4e-18 95.5 198 32.8
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 5.4e-18 95.5 203 33.5
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.4e-18 95.5 199 34.7
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 7.1e-18 95.1 176 35.8
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 7.1e-18 95.1 206 31.6
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 9.2e-18 94.7 198 31.3
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 9.2e-18 94.7 209 30.6
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 9.2e-18 94.7 209 32.5
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.6e-17 94.0 194 31.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.7e-17 93.2 99 43.4
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.7e-17 93.2 196 33.2
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 4.6e-17 92.4 198 31.3
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 6.0e-17 92.0 198 31.3
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 6.0e-17 92.0 198 30.3
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 6.0e-17 92.0 198 31.8
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 6.0e-17 92.0 188 29.8
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 7.8e-17 91.7 197 28.4
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 7.8e-17 91.7 197 28.4
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 7.8e-17 91.7 197 28.4
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 7.8e-17 91.7 197 28.4
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 7.8e-17 91.7 197 28.4
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.0e-16 91.3 198 32.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.0e-16 91.3 195 32.3
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.0e-16 91.3 210 32.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.3e-16 90.9 185 30.8
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.3e-16 90.9 188 30.3
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.7e-16 90.5 108 38.9
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 3.0e-16 89.7 228 28.5
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.0e-16 89.7 200 32.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 3.9e-16 89.4 202 33.7
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 5.1e-16 89.0 205 29.3
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 6.6e-16 88.6 198 30.8
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.9e-15 87.0 97 39.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.9e-15 87.0 147 35.4
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.3e-15 86.3 121 38.8
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.6e-15 85.5 157 33.1
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.2e-14 84.3 191 30.4
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.6e-14 84.0 223 28.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 4.7e-14 82.4 112 36.6
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 6.2e-14 82.0 195 29.2
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.4e-13 80.9 142 33.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.3e-13 80.1 141 31.9
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 5.2e-13 79.0 185 27.0
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 6.8e-13 78.6 245 28.6
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.2e-12 77.8 209 29.7
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.5e-12 77.4 89 36.0
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.6e-12 76.6 238 30.3
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.4e-12 76.3 198 27.8
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.4e-12 75.9 207 28.5
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 7.6e-12 75.1 176 31.8
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 9.9e-12 74.7 100 34.0
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 9.9e-12 74.7 197 26.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.3e-11 74.3 129 28.7
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.2e-11 73.6 157 36.3
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.8e-11 72.8 197 28.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 8.4e-11 71.6 186 26.3
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.9e-10 70.5 195 27.7
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.4e-10 68.9 205 26.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 7.1e-10 68.6 157 30.6
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.6e-09 67.4 120 33.3
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.5e-09 66.2 156 31.4
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 8.6e-08 61.6 190 28.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.3e-07 59.3 100 33.0
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.6e-06 57.4 223 26.9


User provided reference genes

Program Settings