Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 8.1e-230 800.0 402 100.0
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 3.2e-93 346.3 294 57.5
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 1.5e-79 300.8 324 48.1
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.5e-79 300.8 290 52.8
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 3.6e-76 289.7 293 48.5
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 1.0e-75 288.1 322 46.6
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.0e-75 288.1 356 43.3
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.3e-75 287.7 293 47.1
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.3e-75 287.7 294 47.3
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.3e-75 287.7 306 47.1
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 3.0e-75 286.6 294 47.6
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 3.9e-75 286.2 293 47.1
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 3.9e-75 286.2 293 47.1
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 5.1e-75 285.8 294 49.7
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 6.7e-75 285.4 287 49.8
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.7e-75 285.4 294 47.6
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.1e-74 284.6 291 46.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.5e-74 283.5 290 46.9
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 5.7e-74 282.3 320 44.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 9.7e-74 281.6 293 48.1
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.6e-73 280.8 285 48.1
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 3.7e-73 279.6 323 45.2
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.7e-73 279.6 310 46.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.4e-72 276.9 291 46.4
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.1e-72 276.6 297 46.1
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 4.1e-72 276.2 290 47.2
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 4.1e-72 276.2 291 47.8
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 4.1e-72 276.2 289 46.7
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 4.1e-72 276.2 295 47.1
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 6.9e-72 275.4 291 45.7
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 9.1e-72 275.0 346 42.5
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.5e-71 274.2 270 50.0
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.5e-71 274.2 282 47.9
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 2.0e-71 273.9 289 47.8
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 2.0e-71 273.9 313 45.7
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 2.6e-71 273.5 289 47.8
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 3.4e-71 273.1 304 46.4
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 5.9e-71 272.3 328 43.6
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.9e-71 272.3 293 45.7
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.0e-70 271.6 345 42.6
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 1.0e-70 271.6 294 47.6
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.2e-70 270.4 307 46.6
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 5.0e-70 269.2 301 44.5
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 5.0e-70 269.2 296 46.6
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 6.5e-70 268.9 368 43.5
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.1e-69 268.1 316 43.0
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.1e-69 268.1 301 44.9
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.4e-69 267.7 294 47.3
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.9e-69 267.3 292 46.9
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 4.2e-69 266.2 287 45.6
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 4.2e-69 266.2 287 45.6
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 5.5e-69 265.8 294 44.6
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 5.5e-69 265.8 290 44.8
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 9.4e-69 265.0 326 44.2
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 9.4e-69 265.0 326 43.6
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 9.4e-69 265.0 313 44.7
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.2e-68 264.6 325 43.4
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.2e-68 264.6 297 44.4
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.6e-68 264.2 300 44.7
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.6e-68 262.7 313 43.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 6.1e-68 262.3 319 45.1
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.0e-67 261.5 319 41.7
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.0e-67 261.5 294 45.6
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.8e-67 260.8 319 45.1
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 6.7e-67 258.8 367 40.3
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 8.8e-67 258.5 269 48.7
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.1e-66 258.1 403 37.7
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 3.3e-66 256.5 280 43.6
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 4.4e-66 256.1 285 46.0
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 5.7e-66 255.8 322 42.2
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.7e-65 254.2 286 44.1
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.7e-65 254.2 331 40.5
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 6.3e-65 252.3 327 41.0
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 3.1e-64 250.0 333 39.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 5.3e-64 249.2 287 45.6
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.2e-63 248.1 256 46.1
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.5e-63 247.7 320 42.2
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.0e-63 247.3 293 43.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 2.6e-63 246.9 294 42.9
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.4e-63 246.5 291 43.0
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 5.9e-63 245.7 300 44.3
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 7.7e-63 245.4 331 39.0
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.2e-62 243.8 264 45.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.9e-62 243.4 314 39.8
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 3.8e-62 243.0 291 42.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 3.8e-62 243.0 342 42.1
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 8.5e-62 241.9 291 40.9
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 8.5e-62 241.9 310 40.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.4e-61 241.1 342 37.7
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 5.5e-61 239.2 320 39.4
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 3.6e-60 236.5 287 43.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 3.6e-60 236.5 308 41.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.0e-59 235.0 375 35.5
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 5.2e-59 232.6 299 41.8
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 9.4e-53 211.8 236 44.9
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.1e-52 210.7 140 70.7
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.7e-52 210.3 285 40.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.4e-50 203.0 304 39.1
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 9.7e-50 201.8 238 42.9
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 8.2e-49 198.7 326 37.7
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.2e-47 194.9 285 38.9
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.6e-47 194.5 334 38.0
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.3e-46 191.4 285 36.8
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 7.2e-45 185.7 224 45.1
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.7e-39 167.2 204 46.1
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 8.0e-36 155.6 214 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.3e-35 154.1 186 44.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.6e-34 150.6 119 57.1
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.7e-33 147.9 167 47.3
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 2.8e-33 147.1 220 38.6
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 2.8e-33 147.1 220 38.6
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.4e-32 144.8 116 53.4
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 5.4e-32 142.9 220 38.2
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.6e-31 141.4 220 38.6
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.8e-31 139.0 165 41.8
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 5.0e-30 136.3 179 40.8
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.5e-29 134.8 203 39.9
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 5.6e-29 132.9 173 41.0
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.6e-28 131.3 167 40.1
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 4.0e-27 126.7 108 50.0
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 7.8e-23 112.5 244 32.4
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.3e-17 95.1 67 56.7
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.7e-17 94.7 114 40.4
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.2e-17 94.4 68 63.2
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 3.2e-16 90.5 53 66.0
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.2e-15 88.6 100 42.0
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.3e-14 85.1 95 45.3
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 2.3e-14 84.3 71 52.1
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 8.6e-14 82.4 67 49.3
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.3e-13 80.1 128 38.3
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.6e-13 79.7 70 51.4
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 3.5e-07 60.5 53 45.3
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.7e-06 58.2 50 52.0


User provided reference genes

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