Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 3.1e-131 471.9 246 100.0
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 3.2e-27 126.3 121 52.1
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 2.3e-17 93.6 133 39.8
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 3.0e-17 93.2 108 43.5
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 6.7e-17 92.0 129 39.5
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 6.7e-17 92.0 129 38.8
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 4.3e-16 89.4 115 40.9
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 4.3e-16 89.4 101 45.5
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 5.6e-16 89.0 108 42.6
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 5.6e-16 89.0 108 42.6
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 7.4e-16 88.6 101 46.5
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 1.3e-15 87.8 108 40.7
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 6.2e-15 85.5 110 40.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.1e-15 85.1 145 37.2
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 8.1e-15 85.1 95 45.3
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.1e-14 84.7 116 38.8
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.1e-14 84.7 96 49.0
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 3.1e-14 83.2 166 33.7
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 3.1e-14 83.2 79 50.6
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 5.3e-14 82.4 210 31.4
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 5.3e-14 82.4 110 40.0
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 5.3e-14 82.4 219 30.6
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 6.9e-14 82.0 172 33.1
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 6.9e-14 82.0 175 33.7
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 9.0e-14 81.6 105 42.9
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 9.0e-14 81.6 105 42.9
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 9.0e-14 81.6 105 42.9
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 1.2e-13 81.3 106 40.6
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 1.2e-13 81.3 106 40.6
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.5e-13 80.9 147 35.4
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 2.0e-13 80.5 81 48.1
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 2.6e-13 80.1 83 47.0
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 7.6e-13 78.6 76 52.6
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 7.6e-13 78.6 76 52.6
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 7.6e-13 78.6 76 52.6
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 9.9e-13 78.2 106 38.7
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 1.3e-12 77.8 236 29.7
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 1.3e-12 77.8 236 29.7
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.3e-12 77.8 100 44.0
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 2.2e-12 77.0 78 46.2
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 2.2e-12 77.0 78 46.2
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 3.8e-12 76.3 97 44.3
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 8.4e-12 75.1 77 50.6
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 8.4e-12 75.1 82 43.9
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 8.4e-12 75.1 82 43.9
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 8.4e-12 75.1 104 40.4
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 1.9e-11 73.9 103 36.9
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 1.9e-11 73.9 104 38.5
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 2.4e-11 73.6 78 44.9
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 2.4e-11 73.6 104 35.6
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 4.2e-11 72.8 106 40.6
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 5.5e-11 72.4 83 43.4
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 7.1e-11 72.0 101 41.6
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 9.3e-11 71.6 101 41.6
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 2.7e-10 70.1 88 40.9
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 7.9e-10 68.6 81 45.7
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.3e-09 67.8 101 39.6
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 2.3e-09 67.0 81 45.7
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.1e-09 65.9 81 44.4
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.1e-09 65.9 81 44.4
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 4.3e-08 62.8 101 33.7
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 5.6e-08 62.4 81 39.5
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 7.4e-08 62.0 81 39.5
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 9.6e-08 61.6 71 43.7
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.1e-07 60.5 59 50.8
Pp3c13_4900 Physcomitrium patens HOM05D001560 ORTHO05D003613 6.2e-07 58.9 126 41.3
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.1e-06 58.2 77 42.9
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 6.9e-06 55.5 66 42.4
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.9e-06 55.5 59 47.5


User provided reference genes

Program Settings