Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 0.0e+00 1703.0 827 100.0
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 0.0e+00 1547.7 828 90.3
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 0.0e+00 1194.5 766 75.3
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 0.0e+00 1117.8 759 70.9
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.4e-305 1052.7 764 65.2
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 4.9e-298 1027.7 776 62.9
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 3.9e-295 1018.1 757 64.7
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 8.7e-295 1016.9 757 64.2
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 3.3e-294 1015.0 757 63.5
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.8e-292 1009.2 754 63.9
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 1.3e-287 993.0 780 61.8
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 3.0e-287 991.9 796 59.8
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 3.9e-287 991.5 782 61.1
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 8.7e-287 990.3 780 61.2
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 1.5e-286 989.6 754 62.3
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 1.9e-286 989.2 782 61.0
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 4.3e-286 988.0 779 61.5
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 5.6e-286 987.6 760 62.4
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 1.6e-285 986.1 756 62.0
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 2.1e-285 985.7 772 62.2
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 2.1e-285 985.7 781 61.1
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.8e-285 985.3 757 62.1
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 3.6e-285 984.9 781 60.7
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 4.8e-285 984.6 744 61.6
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 1.4e-284 983.0 744 62.5
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 1.4e-284 983.0 778 60.9
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 1.8e-284 982.6 761 61.4
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 2.4e-284 982.2 782 60.6
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 5.3e-284 981.1 756 61.8
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 9.0e-284 980.3 758 62.4
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 1.2e-283 979.9 758 62.1
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 1.2e-283 979.9 780 60.8
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 1.2e-283 979.9 761 61.4
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 2.6e-283 978.8 762 61.9
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.6e-283 978.8 762 61.9
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 7.6e-283 977.2 755 61.6
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 1.3e-282 976.5 756 61.6
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 2.2e-282 975.7 761 61.1
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 4.9e-282 974.5 771 60.7
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 1.4e-281 973.0 760 60.4
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 2.4e-281 972.2 754 60.2
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.4e-281 972.2 762 61.8
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 7.1e-281 970.7 780 59.6
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 7.1e-281 970.7 757 61.3
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 2.1e-280 969.1 761 60.7
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 2.1e-280 969.1 780 59.2
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 2.7e-280 968.8 763 60.8
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 2.7e-280 968.8 763 60.4
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 3.5e-280 968.4 763 60.8
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 3.5e-280 968.4 761 60.6
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.5e-280 968.4 762 61.7
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 3.5e-280 968.4 763 61.5
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 7.9e-280 967.2 808 58.8
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 1.0e-279 966.8 778 59.3
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 3.0e-279 965.3 756 61.2
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 3.9e-279 964.9 781 59.5
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 3.9e-279 964.9 757 60.2
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 5.1e-279 964.5 777 60.0
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 3.3e-278 961.8 778 59.3
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.3e-278 961.8 762 61.2
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 3.7e-277 958.4 760 59.9
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 6.2e-277 957.6 773 59.8
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 1.8e-276 956.1 755 60.8
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 2.4e-276 955.7 759 60.3
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 4.5e-275 951.4 780 59.9
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 4.5e-275 951.4 766 59.9
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 4.9e-274 948.0 795 58.1
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 2.5e-273 945.7 794 57.8
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 2.5e-273 945.7 763 60.9
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 4.2e-273 944.9 781 59.0
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 9.3e-273 943.7 766 59.1
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 9.3e-273 943.7 763 60.7
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 2.1e-272 942.6 760 60.3
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.7e-272 942.2 761 59.9
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 4.6e-272 941.4 749 59.7
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 4.6e-272 941.4 798 57.6
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 1.3e-271 939.9 757 59.3
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 3.0e-271 938.7 753 59.8
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 5.1e-271 937.9 742 61.1
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 1.3e-269 933.3 742 60.4
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 6.9e-268 927.5 756 60.1
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 9.0e-268 927.2 760 58.6
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 2.6e-267 925.6 750 60.1
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 4.5e-267 924.9 756 58.5
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 5.9e-267 924.5 757 58.0
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 2.2e-266 922.5 756 59.4
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 6.5e-266 921.0 750 60.1
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 1.4e-265 919.8 743 60.4
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.5e-265 919.1 755 59.3
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.5e-265 919.1 755 59.3
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 3.2e-265 918.7 818 54.9
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 2.7e-264 915.6 758 57.9
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 4.6e-264 914.8 743 60.3
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 1.3e-263 913.3 706 61.3
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 2.3e-263 912.5 762 58.7
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 2.5e-262 909.1 743 58.8
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 7.4e-262 907.5 787 56.4
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.6e-261 906.4 756 59.5
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 5.3e-260 901.4 742 58.8
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 2.0e-259 899.4 743 58.8
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 5.9e-259 897.9 743 58.7
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 5.9e-259 897.9 743 58.7
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 2.2e-258 896.0 746 58.4
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 2.5e-257 892.5 746 58.4
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 9.4e-257 890.6 742 59.0
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 3.6e-256 888.6 714 61.1
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 3.9e-255 885.2 779 55.3
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 4.3e-254 881.7 573 71.4
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 1.2e-251 873.6 743 56.7
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 1.7e-250 869.8 662 62.4
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.4e-249 866.7 772 56.0
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.5e-241 839.3 629 62.6
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 1.3e-237 827.0 759 54.3
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.4e-231 807.0 728 55.8
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 4.8e-229 798.5 596 63.3
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.3e-229 797.7 558 66.8
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 2.5e-225 786.2 600 60.8
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 7.5e-222 774.6 596 61.2
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 9.8e-222 774.2 603 62.2
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.2e-212 742.7 553 63.3
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 4.3e-209 732.3 788 50.5
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.3e-199 699.9 547 61.1
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 1.5e-193 680.6 570 57.4
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 5.6e-193 678.7 607 55.7
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 3.5e-187 659.4 558 57.5
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.3e-176 624.4 554 53.8
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 2.9e-165 586.6 782 43.5
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 9.1e-119 432.2 387 57.1
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 2.4e-66 258.1 187 65.2
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 5.8e-57 226.9 223 52.9
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 9.3e-55 219.5 262 46.2
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 3.8e-48 197.6 599 26.4
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.4e-47 194.9 614 27.4
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 7.6e-41 173.3 265 42.6
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 9.0e-34 149.8 109 64.2
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 2.5e-28 131.7 253 32.8
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.9e-25 120.6 86 64.0
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.2e-16 92.0 50 86.0
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 2.9e-16 91.7 140 40.7
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.2e-13 80.9 120 40.8
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.1e-12 79.7 47 70.2
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.1e-12 79.7 47 70.2
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 1.3e-11 76.3 212 26.4
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 1.7e-11 75.9 212 26.9
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 1.7e-11 75.9 212 26.9
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 1.7e-11 75.9 212 26.9
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 1.7e-11 75.9 212 26.9
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.7e-11 75.9 57 64.9
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.8e-11 75.1 57 64.9
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 2.8e-11 75.1 377 22.3
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 5.3e-10 70.9 224 24.6
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 5.9e-09 67.4 272 24.6
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 5.9e-09 67.4 373 20.1
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 5.9e-09 67.4 213 24.4
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 2.2e-08 65.5 228 25.4
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 2.2e-08 65.5 275 22.2
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 5.0e-08 64.3 229 21.0
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 8.5e-08 63.5 223 23.8
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 1.1e-07 63.2 183 27.9
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 1.1e-07 63.2 228 24.6
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 1.1e-07 63.2 229 20.5
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.5e-07 62.0 229 22.7
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 5.5e-07 60.8 40 60.0
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 5.5e-07 60.8 258 21.3
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 7.2e-07 60.5 213 22.5
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 7.2e-07 60.5 213 23.0
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 7.2e-07 60.5 214 22.4
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 9.4e-07 60.1 208 24.5
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 1.2e-06 59.7 213 22.1
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.7e-06 58.5 213 22.5
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 3.6e-06 58.2 213 21.6
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 4.7e-06 57.8 62 41.9
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 6.1e-06 57.4 213 21.1
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 6.1e-06 57.4 214 22.9
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 6.1e-06 57.4 213 21.6


User provided reference genes

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