Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_30250 Physcomitrium patens HOM05D024162 ORTHO05D000401 4.3e-68 261.2 128 100.0
Pp3c13_20500 Physcomitrium patens HOM05D024162 ORTHO05D003172 1.3e-51 206.5 107 93.5
Pp3c12_7890 Physcomitrium patens HOM05D024162 ORTHO05D000401 2.6e-49 198.7 107 88.8
Aqoxy1G02949 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 1.7e-11 73.2 105 36.2
Aqoxy6G02363 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 1.7e-11 73.2 105 36.2
Aqoxy3G02110 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 2.8e-11 72.4 105 36.2
TWI09G0456 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 6.3e-11 71.2 99 34.3
Os06g0660650 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 1.8e-10 69.7 102 35.3
Rhsim01G0041500 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.8e-10 69.7 109 35.8
CSS0000195 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0003077 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0004495 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 106 34.0
CSS0006274 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0009093 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 106 34.0
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 106 34.0
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 106 34.0
CSS0019281 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0021750 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0039293 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0042573 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.4e-10 69.3 100 37.0
CSS0042927 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 7.0e-10 67.8 100 37.0
BolC4t26616H Brassica oleracea HOM05D000589 ORTHO05D000401 9.1e-10 67.4 100 34.0
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.1e-10 67.4 76 44.7
Ciclev10003979m.g Citrus clementina HOM05D001576 ORTHO05D000401 1.6e-09 66.6 106 34.9
Rhsim03G0149900 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.7e-09 65.9 109 33.9
BolC8t49094H Brassica oleracea HOM05D000589 ORTHO05D000401 4.5e-09 65.1 103 31.1
FvH4_7g13271 Fragaria vesca HOM05D001576 ORTHO05D000401 4.5e-09 65.1 105 35.2
QL03p006855 Quercus lobata HOM05D001576 ORTHO05D000401 7.7e-09 64.3 100 34.0
QL06p039590 Quercus lobata HOM05D001576 ORTHO05D000401 7.7e-09 64.3 100 34.0
Rhsim03G0135600 Rhododendron simsii HOM05D001576 ORTHO05D010219 1.0e-08 63.9 100 34.0
Aqoxy5G02702 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 1.3e-08 63.5 97 36.1
QL10p048988 Quercus lobata HOM05D001576 ORTHO05D000401 1.3e-08 63.5 99 34.3
FvH4_3g29014 Fragaria vesca HOM05D001576 ORTHO05D000401 1.7e-08 63.2 105 34.3
Hma1.2p1_1313F.1_g274940 Hydrangea macrophylla HOM05D001576 ORTHO05D000401 1.7e-08 63.2 105 31.4
QL03p071586 Quercus lobata HOM05D001576 ORTHO05D000401 1.7e-08 63.2 100 33.0
BolC9t55798H Brassica oleracea HOM05D000589 ORTHO05D000401 2.2e-08 62.8 105 30.5
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.2e-08 62.8 104 32.7
ECA233G0808 Erigeron canadensis HOM05D006295 ORTHO05D008061 2.2e-08 62.8 97 32.0
TWI12G0266 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 2.9e-08 62.4 104 34.6
BolC9t55279H Brassica oleracea HOM05D000589 ORTHO05D000401 3.8e-08 62.0 100 33.0
ECA246G0656 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.8e-08 62.0 97 30.9
Hund19562 Selenicereus undatus HOM05D001576 ORTHO05D000401 3.8e-08 62.0 100 33.0
Hund20099 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.8e-08 62.0 100 33.0
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.0e-08 61.6 73 38.4
CiPaw.14G031000 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.0e-08 61.6 105 31.4
ECA232G3669 Erigeron canadensis HOM05D007803 ORTHO05D009814 5.0e-08 61.6 101 27.7
Hund01990 Selenicereus undatus HOM05D000214 ORTHO05D011049 5.0e-08 61.6 98 34.7
TWI53G1133 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 5.0e-08 61.6 104 29.8
AL68U10010 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 6.5e-08 61.2 111 27.9
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.5e-08 61.2 73 38.4
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.5e-08 61.2 73 38.4
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.5e-08 61.2 73 38.4
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.5e-08 61.2 73 38.4
Os06g0635500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 6.5e-08 61.2 106 31.1
TWI31G0938 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 6.5e-08 61.2 105 33.3
BcaC05g24983 Brassica carinata HOM05D000589 ORTHO05D000401 8.5e-08 60.8 100 31.0
BolC9t58427H Brassica oleracea HOM05D000589 ORTHO05D000401 8.5e-08 60.8 100 31.0
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 8.5e-08 60.8 76 36.8
FvH4_3g26413 Fragaria vesca HOM05D001576 ORTHO05D000401 8.5e-08 60.8 107 31.8
HanXRQChr01g0005601 Helianthus annuus HOM05D017262 ORTHO05D009814 8.5e-08 60.8 101 29.7
PSO478G0274 Papaver somniferum HOM05D008413 ORTHO05D000401 8.5e-08 60.8 101 29.7
PSO541G5389 Papaver somniferum HOM05D008413 ORTHO05D000401 8.5e-08 60.8 101 29.7
QL09p033218 Quercus lobata HOM05D001576 ORTHO05D000401 8.5e-08 60.8 106 33.0
QL09p040841 Quercus lobata HOM05D001576 ORTHO05D000401 8.5e-08 60.8 106 33.0
BolC8t47046H Brassica oleracea HOM05D000589 ORTHO05D000401 1.1e-07 60.5 100 28.0
ECA238G3743 Erigeron canadensis HOM05D007803 ORTHO05D009814 1.1e-07 60.5 100 28.0
SGA_v2.0_scaffold309G48177 Striga asiatica HOM05D001576 ORTHO05D000401 1.1e-07 60.5 110 32.7
HanXRQChr01g0017261 Helianthus annuus HOM05D017262 ORTHO05D009814 1.5e-07 60.1 101 28.7
HanXRQChr04g0114771 Helianthus annuus HOM05D017262 ORTHO05D009814 1.5e-07 60.1 101 28.7
Hma1.2p1_1287F.1_g273260 Hydrangea macrophylla HOM05D009738 ORTHO05D011821 1.5e-07 60.1 98 34.7
AL5G33150 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.9e-07 59.7 111 27.0
BolC6t38535H Brassica oleracea HOM05D000589 ORTHO05D000401 1.9e-07 59.7 102 32.4
Carub.0336s0001 Capsella rubella HOM05D000589 ORTHO05D000401 1.9e-07 59.7 95 31.6
ECA236G1155 Erigeron canadensis HOM05D007803 ORTHO05D009814 1.9e-07 59.7 100 28.0
PSO017G1655 Papaver somniferum HOM05D008413 ORTHO05D000401 1.9e-07 59.7 89 36.0
AL3G20450 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 2.5e-07 59.3 111 27.0
AL7G47730 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 2.5e-07 59.3 111 27.0
BolC7t43862H Brassica oleracea HOM05D000589 ORTHO05D000401 2.5e-07 59.3 105 31.4
Ciclev10018206m.g Citrus clementina HOM05D001576 ORTHO05D000401 2.5e-07 59.3 89 36.0
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 2.5e-07 59.3 104 31.7
ECA236G1296 Erigeron canadensis HOM05D006295 ORTHO05D008061 2.5e-07 59.3 97 29.9
Hund21925 Selenicereus undatus HOM05D001576 ORTHO05D000401 2.5e-07 59.3 97 30.9
Aqoxy3G02268 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 3.2e-07 58.9 85 37.6
BcaC01g01358 Brassica carinata HOM05D000589 ORTHO05D000401 3.2e-07 58.9 105 29.5
BolC9t53773H Brassica oleracea HOM05D000589 ORTHO05D000401 3.2e-07 58.9 100 30.0
ECA236G0993 Erigeron canadensis HOM05D007803 ORTHO05D009814 3.2e-07 58.9 100 27.0
ECA236G2677 Erigeron canadensis HOM05D008491 ORTHO05D007255 3.2e-07 58.9 100 30.0
ECA238G3252 Erigeron canadensis HOM05D007803 ORTHO05D009814 3.2e-07 58.9 100 27.0
HanXRQChr02g0052081 Helianthus annuus HOM05D006295 ORTHO05D008061 3.2e-07 58.9 95 26.3
Lsat_1_v5_gn_5_120561 Lactuca sativa HOM05D006295 ORTHO05D008061 3.2e-07 58.9 111 28.8
Psat6g017600 Pisum sativum HOM05D000589 ORTHO05D000401 3.2e-07 58.9 98 31.6
QL05p011416 Quercus lobata HOM05D001576 ORTHO05D016378 3.2e-07 58.9 100 32.0
SGA_v2.0_scaffold260G45865 Striga asiatica HOM05D001576 ORTHO05D000401 3.2e-07 58.9 110 31.8
BolC7t42664H Brassica oleracea HOM05D000589 ORTHO05D000401 4.2e-07 58.5 100 26.0
BolC7t44420H Brassica oleracea HOM05D000589 ORTHO05D000401 4.2e-07 58.5 105 27.6
ECA246G0647 Erigeron canadensis HOM05D007803 ORTHO05D009814 4.2e-07 58.5 100 27.0
ECA246G2896 Erigeron canadensis HOM05D007803 ORTHO05D009814 4.2e-07 58.5 100 27.0
Pp3c1_500 Physcomitrium patens HOM05D024162 ORTHO05D003172 4.2e-07 58.5 29 96.6
Prupe.1G172500 Prunus persica HOM05D001576 ORTHO05D000401 4.2e-07 58.5 89 34.8
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 5.5e-07 58.2 100 31.0
CSS0038450 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.5e-07 58.2 89 33.7
DCAR_030203 Daucus carota HOM05D001576 ORTHO05D000401 5.5e-07 58.2 99 30.3
ECA233G4733 Erigeron canadensis HOM05D007803 ORTHO05D009814 5.5e-07 58.2 100 27.0
ECA248G2644 Erigeron canadensis HOM05D007803 ORTHO05D009814 5.5e-07 58.2 99 26.3
HanXRQChr04g0121201 Helianthus annuus HOM05D006295 ORTHO05D008061 5.5e-07 58.2 95 26.3
Psat3g071440 Pisum sativum HOM05D000589 ORTHO05D000401 5.5e-07 58.2 100 30.0
Psat4g220720 Pisum sativum HOM05D000589 ORTHO05D000401 5.5e-07 58.2 100 30.0
Psat5g257800 Pisum sativum HOM05D000214 ORTHO05D000401 5.5e-07 58.2 100 30.0
Psat7g167200 Pisum sativum HOM05D000589 ORTHO05D000401 5.5e-07 58.2 100 30.0
Psat7g215720 Pisum sativum HOM05D000589 ORTHO05D000401 5.5e-07 58.2 100 30.0
Hund20929 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 97 29.9
SGA_v2.0_scaffold11G05878 Striga asiatica HOM05D001576 ORTHO05D000401 5.5e-07 58.2 106 31.1
SGA_v2.0_scaffold19G08588 Striga asiatica HOM05D001576 ORTHO05D000401 5.5e-07 58.2 106 31.1
SGA_v2.0_scaffold239G43990 Striga asiatica HOM05D001576 ORTHO05D000401 5.5e-07 58.2 106 31.1
TWI23G0314 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 5.5e-07 58.2 104 32.7
TWI34G0641 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 5.5e-07 58.2 103 28.2
BolC1t03605H Brassica oleracea HOM05D000589 ORTHO05D000401 7.2e-07 57.8 101 28.7
BolC9t55113H Brassica oleracea HOM05D000589 ORTHO05D000401 7.2e-07 57.8 98 30.6
CANSAT01G3197 Cannabis sativa HOM05D001576 ORTHO05D010219 7.2e-07 57.8 113 33.6
ECA238G2971 Erigeron canadensis HOM05D008491 ORTHO05D007255 7.2e-07 57.8 100 29.0
ECA240G1405 Erigeron canadensis HOM05D007803 ORTHO05D009814 7.2e-07 57.8 100 27.0
ECA240G2059 Erigeron canadensis HOM05D007803 ORTHO05D009814 7.2e-07 57.8 100 26.0
TWI23G0007 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 7.2e-07 57.8 103 28.2
BolC4t27712H Brassica oleracea HOM05D000589 ORTHO05D000401 9.4e-07 57.4 97 29.9
BolC5t30704H Brassica oleracea HOM05D000589 ORTHO05D000401 9.4e-07 57.4 100 31.0
ECA233G0556 Erigeron canadensis HOM05D007803 ORTHO05D009814 9.4e-07 57.4 100 27.0
ECA236G2853 Erigeron canadensis HOM05D008491 ORTHO05D007255 9.4e-07 57.4 100 31.0
ECA240G2836 Erigeron canadensis HOM05D006295 ORTHO05D008061 9.4e-07 57.4 111 27.9
Os12g0169300 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 9.4e-07 57.4 106 31.1
Os12g0228500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 9.4e-07 57.4 106 31.1
Haze_20229 Corylus avellana HOM05D001576 ORTHO05D000401 1.2e-06 57.0 95 32.6
Hund13670 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.2e-06 57.0 104 28.8
Hund15479 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.2e-06 57.0 101 31.7
Hund24086 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.2e-06 57.0 95 34.7
SGA_v2.0_scaffold208G41998 Striga asiatica HOM05D008413 ORTHO05D000401 1.2e-06 57.0 106 31.1
SGA_v2.0_scaffold85G26643 Striga asiatica HOM05D008413 ORTHO05D000401 1.2e-06 57.0 106 31.1
BolC7t42127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.6e-06 56.6 100 30.0
Carub.0006s1187 Capsella rubella HOM05D000589 ORTHO05D000401 1.6e-06 56.6 100 30.0
ECA233G6222 Erigeron canadensis HOM05D007803 ORTHO05D009814 1.6e-06 56.6 100 26.0
TWI77G0630 Tripterygium wilfordii HOM05D025099 ORTHO05D000401 1.6e-06 56.6 96 29.2
Zm00001eb138070 Zea mays HOM05D001576 ORTHO05D000401 1.6e-06 56.6 103 28.2
BolC4t23741H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 56.2 105 31.4
BolC8t49443H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 56.2 102 26.5
HanXRQChr13g0394471 Helianthus annuus HOM05D017262 ORTHO05D009814 2.1e-06 56.2 107 28.0
PSO541G0947 Papaver somniferum HOM05D008413 ORTHO05D000401 2.1e-06 56.2 101 27.7
Os02g0463725 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 2.7e-06 55.8 86 30.2
PSO170G1591 Papaver somniferum HOM05D008413 ORTHO05D000401 2.7e-06 55.8 83 31.3
SGA_v2.0_scaffold22G09929 Striga asiatica HOM05D008413 ORTHO05D000401 2.7e-06 55.8 98 31.6
ECA233G2970 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.6e-06 55.5 97 27.8
Rhsim09G0056800 Rhododendron simsii HOM05D001576 ORTHO05D010219 3.6e-06 55.5 100 32.0
Hund22147 Selenicereus undatus HOM05D000923 ORTHO05D000720 3.6e-06 55.5 108 26.9
BolC2t10503H Brassica oleracea HOM05D000589 ORTHO05D000401 4.7e-06 55.1 104 29.8
BolC2t11324H Brassica oleracea HOM05D000589 ORTHO05D000401 4.7e-06 55.1 105 28.6
BolC9t58095H Brassica oleracea HOM05D000589 ORTHO05D000401 4.7e-06 55.1 100 29.0
CSS0001664 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.7e-06 55.1 76 34.2
CSS0049636 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.7e-06 55.1 76 34.2
ECA246G2566 Erigeron canadensis HOM05D007803 ORTHO05D009814 4.7e-06 55.1 100 24.0
MD08G1183800 Malus domestica HOM05D019378 ORTHO05D003172 4.7e-06 55.1 101 27.7
Psat5g094880 Pisum sativum HOM05D000589 ORTHO05D000401 4.7e-06 55.1 100 30.0
Hund03592 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.7e-06 55.1 97 27.8
Hund07454 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.7e-06 55.1 97 27.8
Hund11062 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.7e-06 55.1 97 27.8
Hund18413 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.7e-06 55.1 97 27.8
TWI38G0149 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.7e-06 55.1 71 36.6
BolC3t17722H Brassica oleracea HOM05D000589 ORTHO05D000401 6.1e-06 54.7 97 28.9
BolC6t38683H Brassica oleracea HOM05D000589 ORTHO05D000401 6.1e-06 54.7 100 29.0
Dinv13716 Davidia involucrata HOM05D002266 ORTHO05D010337 6.1e-06 54.7 89 31.5
ECA232G2427 Erigeron canadensis HOM05D007803 ORTHO05D009814 6.1e-06 54.7 100 26.0
ECA232G2931 Erigeron canadensis HOM05D007803 ORTHO05D009814 6.1e-06 54.7 114 25.4
ECA236G4141 Erigeron canadensis HOM05D006295 ORTHO05D008061 6.1e-06 54.7 76 31.6
FAN14G0954 Fragaria x ananassa HOM05D001576 ORTHO05D000401 6.1e-06 54.7 116 29.3
BolC1t00773H Brassica oleracea HOM05D000589 ORTHO05D001885 8.0e-06 54.3 90 28.9
BolC2t11251H Brassica oleracea HOM05D000589 ORTHO05D000401 8.0e-06 54.3 111 28.8
BolC3t14123H Brassica oleracea HOM05D000589 ORTHO05D000401 8.0e-06 54.3 111 28.8
BolC9t56217H Brassica oleracea HOM05D000589 ORTHO05D000401 8.0e-06 54.3 111 29.7
BolC9t58301H Brassica oleracea HOM05D000589 ORTHO05D000401 8.0e-06 54.3 100 29.0
Ciclev10033751m.g Citrus clementina HOM05D001576 ORTHO05D000401 8.0e-06 54.3 88 33.0
ECA232G1370 Erigeron canadensis HOM05D007803 ORTHO05D009814 8.0e-06 54.3 100 25.0


User provided reference genes

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