Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.9e-275 950.3 486 100.0
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.6e-209 731.1 517 77.0
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.9e-185 652.9 499 71.9
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 6.9e-167 591.3 521 61.8
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 6.0e-163 578.2 519 61.5
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 9.0e-159 564.3 517 61.1
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 9.0e-159 564.3 517 61.1
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.2e-158 563.9 523 60.8
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 2.0e-158 563.1 515 60.6
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 4.5e-158 562.0 518 60.2
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 5.9e-158 561.6 514 61.3
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 1.7e-157 560.1 507 60.2
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.2e-157 559.7 517 60.0
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 2.9e-157 559.3 518 60.2
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 6.5e-157 558.1 513 61.0
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 8.5e-157 557.8 515 60.0
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 8.5e-157 557.8 514 60.5
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 8.5e-157 557.8 514 60.5
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 8.5e-157 557.8 517 60.2
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 1.1e-156 557.4 516 59.9
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 1.4e-156 557.0 515 60.0
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 1.9e-156 556.6 513 60.6
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 2.5e-156 556.2 517 60.0
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 3.2e-156 555.8 542 58.9
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.2e-156 555.4 513 60.4
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 5.5e-156 555.1 514 60.5
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 9.3e-156 554.3 518 60.2
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 1.6e-155 553.5 397 72.3
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 7.9e-155 551.2 516 59.5
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 7.9e-155 551.2 517 58.8
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.3e-154 550.4 508 60.0
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.8e-154 550.1 520 59.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 2.3e-154 549.7 517 58.2
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 2.3e-154 549.7 518 60.0
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.1e-153 547.4 537 58.1
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 2.5e-153 546.2 517 58.2
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 4.3e-153 545.4 518 59.7
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 4.3e-153 545.4 516 58.9
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 4.3e-153 545.4 518 60.2
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 9.7e-153 544.3 518 58.9
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 9.7e-153 544.3 511 60.1
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.3e-152 543.9 517 58.8
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.3e-152 543.9 518 58.7
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.6e-152 543.5 520 58.5
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.6e-152 543.5 507 58.8
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.6e-152 543.5 515 59.0
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 2.2e-152 543.1 518 59.1
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.8e-152 542.7 517 59.4
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.8e-152 542.7 517 59.0
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 3.7e-152 542.3 518 58.9
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 3.7e-152 542.3 516 59.1
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 4.8e-152 542.0 517 59.8
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 1.1e-151 540.8 517 58.6
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 1.4e-151 540.4 516 58.7
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-151 540.4 516 58.9
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-151 540.4 516 58.3
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.4e-151 540.4 516 58.3
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.4e-151 540.4 398 68.8
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 1.8e-151 540.0 516 58.3
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 1.8e-151 540.0 517 58.8
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 2.4e-151 539.7 509 59.5
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.4e-151 539.7 396 71.2
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 4.1e-151 538.9 504 59.1
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 4.1e-151 538.9 396 70.2
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 5.3e-151 538.5 515 58.3
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.3e-151 538.5 516 57.8
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 5.3e-151 538.5 518 58.7
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 6.9e-151 538.1 513 58.7
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 9.1e-151 537.7 522 57.9
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.2e-150 537.3 518 57.7
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.2e-150 537.3 517 59.0
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.5e-150 537.0 518 58.5
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 2.6e-150 536.2 515 57.3
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 2.6e-150 536.2 517 58.6
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 3.4e-150 535.8 589 54.2
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 5.9e-150 535.0 396 70.2
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 1.3e-149 533.9 515 57.1
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.7e-149 533.5 517 58.2
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 2.2e-149 533.1 516 58.5
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 5.0e-149 531.9 508 59.3
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 8.5e-149 531.2 516 57.6
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 8.5e-149 531.2 397 69.8
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.1e-148 530.8 359 74.9
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 3.2e-148 529.3 520 57.7
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 4.2e-148 528.9 535 56.8
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 5.5e-148 528.5 488 60.0
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.2e-147 527.3 515 57.1
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 1.6e-147 526.9 520 57.1
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.6e-147 526.9 516 57.4
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 2.1e-147 526.6 387 71.1
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 3.6e-147 525.8 513 58.1
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 4.6e-147 525.4 511 58.1
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 7.9e-147 524.6 516 56.2
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 7.9e-147 524.6 515 56.5
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 7.9e-147 524.6 519 56.6
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 3.0e-146 522.7 547 55.0
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.0e-146 522.7 515 56.5
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 8.8e-146 521.2 537 56.6
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.7e-145 518.5 517 56.5
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 9.7e-145 517.7 519 56.5
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 2.2e-144 516.5 517 56.5
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.7e-144 515.8 518 56.2
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 4.8e-144 515.4 519 56.3
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 8.2e-144 514.6 519 55.9
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.1e-143 514.2 517 56.5
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 1.0e-141 507.7 369 70.7
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.7e-141 506.9 642 48.3
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.2e-141 506.5 519 55.5
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 3.8e-141 505.8 549 54.3
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 6.5e-141 505.0 517 56.1
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 2.7e-139 499.6 545 54.3
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.3e-138 496.5 548 53.8
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 3.0e-138 496.1 380 68.2
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.1e-137 494.2 517 54.4
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 3.3e-137 492.7 517 55.1
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.3e-135 485.3 524 54.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 4.5e-134 482.3 505 55.6
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 5.9e-134 481.9 467 58.9
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 5.5e-132 475.3 515 53.8
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 3.3e-129 466.1 507 53.1
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 2.2e-125 453.4 539 50.8
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 2.5e-124 449.9 515 49.1
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 5.9e-118 428.7 448 55.6
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.9e-116 423.7 422 58.3
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 3.2e-116 422.9 361 63.2
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 3.4e-113 412.9 422 57.3
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 1.9e-108 397.1 443 52.8
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.0e-106 391.3 301 67.4
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 3.4e-105 386.3 407 56.3
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 1.5e-100 370.9 501 45.7
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 1.4e-98 364.4 246 76.0
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 9.8e-97 358.2 270 69.3
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 6.0e-94 349.0 270 68.9
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 1.7e-93 347.4 220 78.6
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 9.9e-89 331.6 293 62.8
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 4.1e-87 326.2 570 40.5
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.1e-76 291.6 387 45.5
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 4.9e-72 276.2 355 47.6
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.2e-70 271.6 204 69.1
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 6.0e-70 269.2 207 67.6
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.8e-66 257.7 163 75.5
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.2e-65 255.0 166 74.1
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.2e-65 255.0 166 74.1
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 3.9e-61 240.0 156 74.4
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 7.6e-57 225.7 166 72.9
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 1.8e-45 188.0 111 83.8
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 6.7e-45 186.0 316 37.7
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.4e-42 178.3 141 64.5
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 4.1e-42 176.8 128 68.8
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 5.9e-41 172.9 110 73.6
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 2.3e-37 161.0 102 76.5
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.7e-32 144.8 247 40.9
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 3.9e-29 133.7 88 77.3
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 3.7e-27 127.1 238 38.7
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 7.0e-26 122.9 140 51.4
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 3.6e-22 110.5 93 59.1
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 4.4e-20 103.6 186 39.8
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 1.7e-19 101.7 215 32.6
Lalb_Chr14g0370511 Lupinus albus HOM05D003579 ORTHO05D004266 3.7e-19 100.5 65 67.7
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 1.8e-18 98.2 107 48.6
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.6e-17 94.4 60 71.7
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 3.2e-15 87.4 80 62.5
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 7.2e-15 86.3 211 33.6
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 1.2e-14 85.5 85 55.3
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 1.0e-13 82.4 67 61.2
VMungo1383G3479 Vigna mungo HOM05D003579 ORTHO05D004266 1.0e-13 82.4 68 61.8
Potri.011G011650 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.4e-13 82.0 56 73.2
Lj1g0020491 Lotus japonicus HOM05D003579 ORTHO05D004266 8.8e-13 79.3 228 30.3
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 1.5e-12 78.6 141 41.1
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 9.7e-12 75.9 67 59.7
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 1.3e-11 75.5 87 54.0
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 2.2e-11 74.7 79 50.6
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 3.7e-11 73.9 195 30.8
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 1.8e-10 71.6 70 55.7
ClCG04G012790 Citrullus lanatus HOM05D003579 ORTHO05D004266 2.7e-09 67.8 46 67.4
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 5.9e-09 66.6 191 31.4
Lsat_1_v5_gn_2_30601 Lactuca sativa HOM05D000929 ORTHO05D003255 7.7e-09 66.2 80 43.8
Lsat_1_v5_gn_2_16661 Lactuca sativa HOM05D000929 ORTHO05D003255 1.3e-08 65.5 55 54.5
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 5.0e-08 63.5 51 62.7
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 3.6e-06 57.4 118 38.1


User provided reference genes

Program Settings