Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 1.1e-44 183.0 93 100.0
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 3.1e-23 111.7 87 63.2
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 2.0e-22 109.0 85 63.5
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 4.4e-22 107.8 87 62.1
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 4.4e-22 107.8 87 62.1
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 9.9e-22 106.7 87 60.9
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 1.3e-21 106.3 87 60.9
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 1.7e-21 105.9 87 60.9
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 1.7e-21 105.9 87 62.1
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 2.2e-21 105.5 85 61.2
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 2.9e-21 105.1 86 60.5
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 2.9e-21 105.1 87 58.6
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 2.9e-21 105.1 85 60.0
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 3.7e-21 104.8 87 59.8
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 3.7e-21 104.8 87 58.6
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 3.7e-21 104.8 87 57.5
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 6.4e-21 104.0 87 57.5
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 6.4e-21 104.0 87 57.5
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 6.4e-21 104.0 87 57.5
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 8.4e-21 103.6 87 58.6
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 8.4e-21 103.6 85 61.2
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 8.4e-21 103.6 89 58.4
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 1.1e-20 103.2 86 60.5
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.1e-20 103.2 87 60.9
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 1.1e-20 103.2 87 60.9
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 1.1e-20 103.2 87 58.6
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 1.1e-20 103.2 87 58.6
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 60.5
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 60.5
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 1.4e-20 102.8 87 58.6
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.9e-20 102.4 87 59.8
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.9e-20 102.4 87 56.3
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.9e-20 102.4 86 59.3
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.9e-20 102.4 87 57.5
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.9e-20 102.4 87 58.6
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 2.4e-20 102.1 87 57.5
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 3.2e-20 101.7 87 58.6
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 3.2e-20 101.7 87 56.3
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.2e-20 101.7 87 57.5
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 4.1e-20 101.3 85 58.8
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 4.1e-20 101.3 85 58.8
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 4.1e-20 101.3 84 60.7
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 4.1e-20 101.3 87 58.6
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 5.4e-20 100.9 87 58.6
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 5.4e-20 100.9 87 58.6
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 5.4e-20 100.9 87 57.5
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 5.4e-20 100.9 87 56.3
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 7.1e-20 100.5 87 55.2
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 7.1e-20 100.5 87 56.3
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 7.1e-20 100.5 85 57.6
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 7.1e-20 100.5 85 58.8
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 7.1e-20 100.5 87 58.6
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 9.2e-20 100.1 87 56.3
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 9.2e-20 100.1 88 56.8
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 9.2e-20 100.1 87 55.2
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 9.2e-20 100.1 87 57.5
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 1.2e-19 99.8 87 56.3
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 59.3
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 1.2e-19 99.8 87 56.3
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 58.1
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 58.1
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 55.8
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.6e-19 99.4 87 56.3
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 2.1e-19 99.0 87 56.3
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 2.1e-19 99.0 87 56.3
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 2.1e-19 99.0 89 55.1
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 2.1e-19 99.0 86 58.1
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 2.1e-19 99.0 86 58.1
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 2.7e-19 98.6 88 55.7
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 2.7e-19 98.6 87 56.3
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 2.7e-19 98.6 86 57.0
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 2.7e-19 98.6 86 57.0
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 3.5e-19 98.2 87 54.0
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 4.6e-19 97.8 87 56.3
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 4.6e-19 97.8 86 57.0
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.0e-19 97.4 83 56.6
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 6.0e-19 97.4 88 55.7
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 6.0e-19 97.4 86 55.8
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 6.0e-19 97.4 87 55.2
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.0e-18 96.7 86 54.7
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 1.7e-18 95.9 91 54.9
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 3.9e-18 94.7 82 58.5
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.6e-18 94.0 83 55.4
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 6.6e-18 94.0 87 56.3
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 8.6e-18 93.6 86 54.7
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 1.5e-17 92.8 87 51.7
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.5e-17 92.8 87 52.9
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.9e-17 92.4 86 53.5
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 3.3e-17 91.7 87 50.6
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 3.3e-17 91.7 85 55.3
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 4.3e-17 91.3 87 50.6
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 5.6e-17 90.9 79 58.2
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 1.2e-16 89.7 83 55.4
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 1.6e-16 89.4 82 54.9
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 2.1e-16 89.0 85 50.6
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 2.8e-16 88.6 85 50.6
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 3.6e-16 88.2 85 49.4
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 3.6e-16 88.2 85 49.4
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.7e-16 87.8 85 49.4
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.7e-16 87.8 85 49.4
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.7e-16 87.8 85 49.4
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.7e-16 87.8 85 49.4
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 4.7e-16 87.8 74 58.1
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 4.7e-16 87.8 85 49.4
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 6.2e-16 87.4 85 49.4
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 5.2e-15 84.3 79 54.4
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 5.8e-14 80.9 70 55.7
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 2.9e-13 78.6 85 48.2
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.9e-13 78.6 87 48.3
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.3e-10 69.7 70 48.6
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 2.3e-10 68.9 85 42.4
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.3e-10 68.9 60 60.0
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 3.9e-10 68.2 81 46.9
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.3e-08 63.2 85 41.2
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 2.8e-08 62.0 57 52.6
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 4.8e-08 61.2 60 55.0
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 4.0e-07 58.2 70 47.1
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 1.5e-06 56.2 60 48.3
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 2.0e-06 55.8 60 48.3
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 5.8e-06 54.3 42 59.5


User provided reference genes

Program Settings