Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.6e-258 895.6 444 100.0
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.3e-175 617.8 445 65.2
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 2.5e-171 605.9 439 66.7
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 6.5e-164 581.3 465 61.7
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.2e-157 560.5 436 60.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.2e-156 556.2 440 60.0
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.9e-156 555.8 434 60.4
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 8.5e-156 554.3 438 59.4
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.1e-155 553.9 441 58.7
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.2e-155 552.4 434 60.4
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 4.2e-155 552.0 435 58.2
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 5.5e-155 551.6 441 59.2
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 5.5e-155 551.6 440 59.3
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 9.4e-155 550.8 436 59.6
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.2e-154 550.4 438 59.1
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 2.7e-154 549.3 427 59.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.4e-153 547.0 441 58.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.8e-153 546.6 429 59.7
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.8e-153 546.6 429 59.2
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.3e-153 546.2 428 61.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 3.0e-153 545.8 429 59.2
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 5.2e-153 545.0 430 59.3
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 6.8e-153 544.7 438 58.2
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 6.8e-153 544.7 429 59.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.8e-153 544.7 440 58.4
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 6.8e-153 544.7 440 58.0
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.5e-152 543.5 429 59.4
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.6e-152 542.7 427 58.3
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 3.4e-152 542.3 429 59.2
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 4.4e-152 542.0 441 57.1
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.7e-152 541.6 439 60.6
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 7.5e-152 541.2 429 58.7
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 9.8e-152 540.8 429 58.3
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.3e-151 540.4 440 58.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.7e-151 540.0 441 59.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.2e-151 539.7 441 57.8
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 2.8e-151 539.3 428 60.5
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.8e-151 539.3 445 57.8
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 3.7e-151 538.9 430 59.8
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 4.8e-151 538.5 440 57.0
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 6.3e-151 538.1 458 57.0
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 8.3e-151 537.7 438 58.4
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 8.3e-151 537.7 427 57.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.8e-150 536.6 434 59.9
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.8e-150 536.6 440 57.7
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 2.4e-150 536.2 438 56.4
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 2.4e-150 536.2 441 58.3
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.1e-150 535.4 427 57.8
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 5.4e-150 535.0 423 60.8
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 5.4e-150 535.0 441 57.8
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 7.0e-150 534.6 438 56.2
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 7.0e-150 534.6 424 61.1
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 7.0e-150 534.6 438 58.9
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 7.0e-150 534.6 441 57.4
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 9.1e-150 534.3 423 60.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 9.1e-150 534.3 424 58.5
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.2e-149 533.9 431 58.7
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.0e-149 533.1 431 59.6
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.0e-149 533.1 424 60.8
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 3.5e-149 532.3 436 57.6
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 5.9e-149 531.6 430 58.4
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 7.7e-149 531.2 429 57.8
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.0e-148 530.8 429 59.2
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.0e-148 530.8 427 59.5
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 2.3e-148 529.6 441 58.5
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 5.0e-148 528.5 427 57.8
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 6.6e-148 528.1 439 57.9
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 8.6e-148 527.7 435 58.4
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.9e-147 526.6 443 56.7
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 4.2e-147 525.4 440 57.0
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 5.5e-147 525.0 419 58.5
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 5.5e-147 525.0 440 57.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 7.2e-147 524.6 440 57.0
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-146 523.9 451 55.9
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.2e-146 523.9 428 57.5
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 4.7e-146 521.9 441 56.7
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 6.1e-146 521.5 426 58.2
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 8.0e-146 521.2 419 59.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 8.0e-146 521.2 427 57.8
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.4e-145 520.4 388 62.4
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.4e-145 520.4 424 58.0
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.8e-145 520.0 429 56.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.0e-145 519.2 381 62.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 4.0e-145 518.8 429 57.1
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 6.8e-145 518.1 426 57.7
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.5e-144 516.9 427 55.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 4.4e-144 515.4 440 56.4
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.5e-144 514.6 441 56.5
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 6.3e-143 511.5 402 59.2
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-142 510.8 469 54.6
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 5.9e-141 505.0 419 55.6
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.0e-140 504.2 425 56.2
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-140 503.8 451 54.5
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.5e-139 500.4 430 57.2
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.5e-139 499.6 427 54.1
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 4.3e-139 498.8 375 64.0
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.1e-138 495.0 453 54.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 8.9e-137 491.1 471 51.8
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 4.4e-136 488.8 390 60.0
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 7.5e-136 488.0 424 55.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 4.3e-131 472.2 472 50.6
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.2e-128 464.2 447 52.1
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.7e-127 460.3 496 47.8
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.7e-124 450.3 438 50.9
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.1e-123 447.6 387 56.1
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 8.1e-122 441.4 362 59.1
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.0e-120 436.8 422 51.2
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.9e-119 433.0 440 50.0
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 2.3e-116 423.3 539 43.4
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 8.1e-114 414.8 429 49.0
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.9e-111 406.4 466 45.3
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 6.6e-108 395.2 300 61.0
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 8.4e-103 378.3 285 61.4
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.8e-98 362.5 243 67.5
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.5e-96 355.9 258 63.2
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 2.2e-95 353.6 508 39.6
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 8.4e-95 351.7 441 42.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 7.4e-91 338.6 376 44.9
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.1e-78 298.1 194 69.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 7.9e-77 292.0 265 54.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 3.0e-76 290.0 192 66.7
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.5e-67 260.4 244 52.5
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.7e-55 221.1 242 46.7
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.6e-48 197.2 419 30.5
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.5e-48 196.4 165 58.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.4e-44 184.9 163 55.2
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 6.3e-42 176.0 184 48.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.7e-40 170.6 134 61.2
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 8.0e-37 159.1 141 53.9
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.5e-35 154.8 192 44.8
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.6e-35 154.1 187 44.4
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.3e-34 151.8 110 60.9
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.2e-34 151.0 150 50.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.8e-33 147.9 242 36.8
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 5.9e-32 142.9 91 65.9
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 4.0e-28 130.2 145 46.2
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 6.8e-28 129.4 96 59.4
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 9.8e-27 125.6 86 61.6
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 7.8e-24 115.9 106 56.6
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.3e-23 114.4 123 48.8
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 6.2e-21 106.3 74 63.5
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 3.1e-20 104.0 126 44.4
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.8e-19 99.0 96 49.0
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 4.3e-14 83.6 66 57.6
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.5e-11 75.1 43 81.4
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 5.4e-09 66.6 65 52.3
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 4.6e-08 63.5 64 48.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 7.8e-08 62.8 51 58.8
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.5e-06 55.8 63 49.2


User provided reference genes

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