Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.9e-187 658.3 307 100.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.5e-79 300.4 301 48.2
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 2.2e-70 270.0 288 43.1
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 8.5e-70 268.1 288 42.7
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 6.1e-68 261.9 304 40.8
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 8.7e-67 258.1 290 43.1
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 8.7e-67 258.1 289 43.3
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.9e-66 256.9 285 42.1
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.9e-66 256.9 289 42.2
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 3.3e-66 256.1 286 43.4
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 5.7e-66 255.4 300 41.0
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 7.4e-66 255.0 289 41.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.2e-65 253.4 300 43.0
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.7e-65 252.7 285 41.8
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 4.8e-65 252.3 296 41.9
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 6.3e-65 251.9 288 42.0
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 6.3e-65 251.9 288 40.6
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 8.2e-65 251.5 289 42.6
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.1e-64 251.1 288 41.7
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 1.1e-64 251.1 304 40.5
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.4e-64 250.8 287 41.1
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 1.4e-64 250.8 288 40.6
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.8e-64 250.4 306 42.8
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 3.1e-64 249.6 287 41.8
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 4.1e-64 249.2 297 39.7
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 4.1e-64 249.2 302 41.4
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.1e-64 249.2 288 40.6
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 5.3e-64 248.8 288 41.3
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 5.3e-64 248.8 288 41.0
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 9.1e-64 248.1 288 41.0
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 9.1e-64 248.1 290 43.1
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 9.1e-64 248.1 286 42.0
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.2e-63 247.7 286 41.3
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.2e-63 247.7 336 38.1
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 1.5e-63 247.3 288 40.3
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 2.6e-63 246.5 285 41.4
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.4e-63 246.1 302 39.4
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 3.4e-63 246.1 286 42.3
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.5e-63 245.7 285 40.7
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 4.5e-63 245.7 296 40.9
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 5.9e-63 245.4 299 39.1
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 5.9e-63 245.4 281 41.3
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 7.7e-63 245.0 288 39.9
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 7.7e-63 245.0 296 38.9
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 7.7e-63 245.0 289 41.2
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 7.7e-63 245.0 283 42.8
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.0e-62 244.6 288 40.6
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.3e-62 244.2 290 42.4
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.3e-62 244.2 288 40.6
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.3e-62 244.2 288 39.6
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.3e-62 244.2 288 40.6
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.7e-62 243.8 285 40.7
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.7e-62 243.8 287 40.1
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.7e-62 243.8 288 39.2
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.7e-62 243.8 285 41.1
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.7e-62 243.8 286 41.6
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.9e-62 243.0 281 42.0
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.9e-62 243.0 285 40.7
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 2.9e-62 243.0 285 41.4
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 3.8e-62 242.7 289 41.5
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 3.8e-62 242.7 284 41.2
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.0e-62 242.3 285 40.4
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 6.5e-62 241.9 303 39.3
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 6.5e-62 241.9 288 39.9
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.4e-61 240.7 289 40.8
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.9e-61 240.4 287 40.8
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.5e-61 240.0 288 40.6
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.5e-61 240.0 285 39.3
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.5e-61 240.0 285 40.0
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.5e-61 240.0 298 40.6
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 3.2e-61 239.6 289 40.8
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 4.2e-61 239.2 288 39.6
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 4.2e-61 239.2 293 43.0
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 1.2e-60 237.7 288 40.3
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.1e-60 236.9 285 39.6
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 3.6e-60 236.1 288 40.3
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.6e-60 235.7 285 38.9
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 6.1e-60 235.3 288 38.9
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 7.9e-60 235.0 285 40.4
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.0e-59 234.6 288 39.9
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.0e-59 234.6 308 38.6
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.0e-59 234.6 283 40.6
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.0e-59 234.6 279 40.5
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.4e-59 234.2 287 39.4
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.4e-59 234.2 287 39.4
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 3.0e-59 233.0 274 39.8
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 5.1e-59 232.3 273 40.3
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 1.1e-58 231.1 274 41.6
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.0e-58 230.3 288 39.9
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 4.4e-58 229.2 286 39.9
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 5.7e-58 228.8 284 37.3
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 7.4e-58 228.4 280 40.0
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 9.7e-58 228.0 288 39.6
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.3e-57 227.6 270 42.6
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.7e-57 227.3 269 40.1
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.2e-57 226.9 300 38.3
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 8.2e-57 224.9 327 37.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.1e-56 224.6 271 39.9
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.8e-56 223.8 305 39.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 2.0e-55 220.3 301 36.5
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 4.5e-55 219.2 288 39.9
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 4.5e-55 219.2 301 39.2
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.9e-54 216.5 298 37.9
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 8.5e-54 214.9 282 37.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 2.5e-53 213.4 301 37.2
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.6e-52 210.7 288 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.9e-51 206.1 200 48.0
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.1e-48 198.0 316 34.8
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 3.1e-48 196.4 243 38.7
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 3.5e-47 193.0 288 36.5
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 6.5e-46 188.7 300 37.3
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 3.3e-42 176.4 258 35.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.3e-38 164.5 293 31.7
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 5.0e-38 162.5 284 33.5
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.5e-37 160.2 247 37.7
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 2.1e-36 157.1 308 28.6
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 6.3e-33 145.6 217 34.6
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 2.9e-30 136.7 180 36.1
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 3.2e-29 133.3 198 33.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 1.7e-22 110.9 123 41.5
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.9e-21 107.5 87 54.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 9.5e-21 105.1 83 51.8
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.4e-19 101.3 194 32.5
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.9e-13 80.9 120 35.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 7.5e-10 68.9 70 40.0
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 6.6e-06 55.8 72 38.9


User provided reference genes

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