Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.1e-296 1022.7 563 100.0
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.3e-136 488.4 454 57.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.3e-136 488.4 454 57.5
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.1e-131 471.9 451 56.5
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.7e-129 467.2 421 58.4
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.3e-129 466.8 447 58.2
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.0e-121 441.4 485 51.8
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.3e-121 441.0 521 49.3
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 3.0e-121 439.9 447 55.0
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 8.7e-121 438.3 502 50.6
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.5e-120 437.6 499 50.5
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.9e-120 437.2 510 50.0
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 2.5e-120 436.8 440 54.3
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 3.3e-120 436.4 496 50.6
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 4.3e-120 436.0 497 50.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 7.3e-120 435.3 509 50.7
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.3e-120 435.3 495 50.5
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.6e-120 434.9 501 50.5
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.3e-119 434.5 511 50.1
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 3.6e-119 433.0 481 50.5
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 4.8e-119 432.6 532 47.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.8e-118 430.6 511 49.9
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.8e-118 430.6 464 51.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.8e-118 430.6 505 49.3
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.4e-118 430.3 508 49.4
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.4e-118 430.3 517 48.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 3.1e-118 429.9 494 51.2
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 3.1e-118 429.9 518 47.9
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 3.1e-118 429.9 502 50.0
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.1e-118 429.9 502 50.2
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.0e-118 429.5 502 50.0
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 6.9e-118 428.7 479 51.4
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.0e-118 428.3 531 47.5
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-117 427.9 500 50.4
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.2e-117 427.9 486 50.6
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.2e-117 427.9 508 50.6
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.2e-117 427.9 498 49.8
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.5e-117 427.6 447 51.9
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.0e-117 427.2 503 49.9
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.0e-117 427.2 495 50.3
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 2.6e-117 426.8 513 49.3
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.6e-117 426.8 496 50.0
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.6e-117 426.8 425 55.3
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.6e-117 426.8 498 48.8
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 3.4e-117 426.4 480 50.2
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 3.4e-117 426.4 497 49.1
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 3.4e-117 426.4 472 51.1
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.4e-117 426.4 495 50.1
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.4e-117 426.4 506 49.2
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 5.8e-117 425.6 473 51.0
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 5.8e-117 425.6 524 47.9
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.8e-117 425.6 506 49.0
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 5.8e-117 425.6 453 52.5
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 7.6e-117 425.2 495 49.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 7.6e-117 425.2 450 52.4
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 9.9e-117 424.9 500 49.8
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 9.9e-117 424.9 507 48.9
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.3e-116 424.5 504 49.0
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.3e-116 424.5 441 53.3
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.3e-116 424.5 449 53.0
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 2.2e-116 423.7 447 52.1
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.2e-116 423.7 490 50.2
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.2e-116 423.7 490 50.2
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.2e-116 423.7 521 47.4
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.2e-116 423.7 515 47.8
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.9e-116 423.3 476 51.1
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.9e-116 423.3 504 48.0
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 3.8e-116 422.9 552 46.6
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.8e-116 422.9 508 48.6
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 6.4e-116 422.2 514 48.4
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 8.4e-116 421.8 506 50.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 8.4e-116 421.8 514 47.9
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 8.4e-116 421.8 542 46.9
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.4e-116 421.8 491 49.5
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.4e-116 421.8 493 50.5
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.1e-115 421.4 455 50.8
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.1e-115 421.4 508 48.4
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.1e-115 421.4 505 49.7
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.1e-115 421.4 500 49.8
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.1e-115 421.4 500 49.8
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.4e-115 421.0 506 49.2
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.9e-115 420.6 546 45.8
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 2.4e-115 420.2 513 47.6
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 2.4e-115 420.2 455 50.5
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.4e-115 420.2 493 50.3
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.4e-115 420.2 513 48.3
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 3.2e-115 419.9 514 47.3
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.2e-115 419.9 507 48.9
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 4.2e-115 419.5 504 48.4
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 4.2e-115 419.5 455 50.3
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 5.4e-115 419.1 455 50.5
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 5.4e-115 419.1 504 48.4
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 5.4e-115 419.1 516 48.8
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 5.4e-115 419.1 468 51.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 5.4e-115 419.1 506 48.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 7.1e-115 418.7 447 51.9
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.3e-115 418.3 435 52.6
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.2e-114 417.9 514 46.9
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.2e-114 417.9 515 47.6
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.6e-114 417.5 493 48.7
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.1e-114 417.2 491 50.1
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.7e-114 416.8 502 48.0
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 2.7e-114 416.8 493 48.5
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.7e-114 416.8 514 47.9
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 4.6e-114 416.0 506 48.4
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 6.0e-114 415.6 518 47.5
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.0e-114 415.6 518 48.5
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 7.8e-114 415.2 515 47.4
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 7.8e-114 415.2 513 47.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 1.0e-113 414.8 513 47.4
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.3e-113 414.5 496 49.4
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.3e-113 414.5 456 52.0
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.7e-113 414.1 506 47.2
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.3e-113 413.7 513 46.8
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.1e-113 412.5 494 47.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 6.6e-113 412.1 519 47.0
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 8.7e-113 411.8 494 48.4
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-112 411.4 497 47.9
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.9e-112 410.6 502 49.0
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 3.3e-112 409.8 514 47.7
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 4.3e-112 409.5 516 46.3
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 5.6e-112 409.1 499 48.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 7.3e-112 408.7 496 48.2
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 9.6e-112 408.3 500 47.6
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.6e-112 408.3 497 47.9
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.8e-111 406.8 518 46.7
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 6.2e-111 405.6 511 47.4
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.0e-110 402.9 542 45.2
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 5.3e-110 402.5 500 47.4
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 9.0e-110 401.7 472 49.6
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.5e-109 401.0 543 45.3
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.0e-109 400.6 456 50.9
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.4e-109 399.8 471 48.8
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.7e-108 397.5 488 49.0
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-107 394.4 502 47.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.5e-106 389.8 558 43.5
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 6.7e-105 385.6 476 48.1
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.3e-104 383.3 438 50.9
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 2.8e-103 380.2 456 48.5
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 2.6e-101 373.6 481 47.0
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.4e-99 367.9 529 43.5
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 5.5e-99 365.9 380 53.7
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 6.7e-97 359.0 477 44.4
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 3.3e-88 330.1 384 49.0
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 3.7e-87 326.6 543 37.4
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 3.6e-82 310.1 424 45.0
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 3.6e-82 310.1 359 47.4
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 5.0e-76 289.7 520 38.8
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 1.9e-75 287.7 529 38.0
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 5.5e-75 286.2 502 39.8
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 7.0e-70 269.2 324 48.8
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 5.7e-64 249.6 300 48.0
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.5e-60 236.1 453 39.5
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.2e-53 215.3 226 53.1
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 7.5e-48 196.1 292 45.9
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.1e-46 189.1 476 35.5
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.7e-45 187.6 187 55.6
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 9.8e-40 169.1 125 70.4
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.7e-28 131.7 262 32.1
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 3.1e-25 120.9 98 59.2
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 2.6e-24 117.9 440 26.4
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 6.0e-21 106.7 78 74.4
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 7.3e-19 99.8 189 34.4
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 9.5e-19 99.4 203 33.5
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.0e-16 91.7 93 54.8
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.3e-15 89.0 134 42.5
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.2e-15 88.2 93 44.1
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 3.2e-14 84.3 85 47.1
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 3.2e-14 84.3 91 45.1
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 4.1e-14 84.0 50 76.0
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 1.9e-11 75.1 60 65.0
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 1.9e-11 75.1 60 65.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 2.5e-11 74.7 57 64.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.2e-10 72.4 54 68.5
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 2.1e-10 71.6 62 61.3
Cre17.g738500 Chlamydomonas reinhardtii HOM05D003681 ORTHO05D004703 2.4e-09 68.2 123 35.0
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.9e-07 61.2 57 56.1


User provided reference genes

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