Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 0.0e+00 1171.0 591 100.0
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.5e-213 745.3 593 67.1
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-95 354.8 573 39.6
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-81 308.1 548 37.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-81 308.1 548 37.6
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.9e-81 307.8 600 34.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 9.2e-81 305.4 592 36.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 6.2e-69 266.2 584 34.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.1e-65 253.4 532 33.1
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.3e-62 243.4 492 34.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.2e-61 239.6 571 30.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.9e-59 232.3 415 37.8
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.9e-58 230.7 438 37.0
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 5.8e-51 206.5 449 32.7
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.3e-47 194.5 568 29.9
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.9e-42 177.6 595 28.7
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 8.4e-42 176.0 331 35.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.2e-41 173.7 266 39.8
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 2.1e-40 171.4 476 30.7
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 6.0e-40 169.9 556 28.4
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.9e-40 169.5 233 39.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.7e-39 166.4 225 42.7
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 6.7e-39 166.4 258 43.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.7e-39 166.4 305 35.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.7e-39 166.4 305 35.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.5e-38 165.2 245 41.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.5e-38 165.2 221 43.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.6e-38 163.3 305 36.1
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.4e-38 162.9 245 40.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.6e-38 162.5 305 35.4
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.3e-37 162.2 317 36.3
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.3e-37 162.2 480 26.7
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.3e-37 162.2 225 42.7
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.3e-37 162.2 229 40.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.6e-37 161.8 480 27.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.6e-37 161.8 392 32.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.1e-37 161.4 323 35.6
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.8e-37 161.0 497 27.4
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 3.7e-37 160.6 297 35.4
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.8e-37 160.2 305 34.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 4.8e-37 160.2 280 37.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 6.2e-37 159.8 233 40.8
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.1e-37 159.5 225 42.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.8e-36 158.3 296 36.5
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.0e-36 157.1 230 41.3
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.0e-36 157.1 218 41.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 5.3e-36 156.8 223 41.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.3e-36 156.8 298 35.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 6.9e-36 156.4 223 42.6
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.9e-36 156.4 219 41.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 6.9e-36 156.4 243 39.5
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 6.9e-36 156.4 302 37.1
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 9.0e-36 156.0 244 41.0
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 9.0e-36 156.0 242 40.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.0e-36 156.0 225 41.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.5e-35 155.2 300 37.3
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.5e-35 155.2 297 36.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 2.0e-35 154.8 296 35.5
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.0e-35 154.8 240 39.2
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.6e-35 154.5 222 41.0
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.4e-35 154.1 317 35.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.6e-35 152.9 226 39.4
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 7.6e-35 152.9 222 41.0
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 7.6e-35 152.9 473 28.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.6e-35 152.9 405 30.4
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.0e-34 152.5 227 41.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.0e-34 152.5 241 38.6
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-34 151.8 219 40.6
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-34 151.8 219 40.6
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-34 151.8 219 40.6
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.2e-34 151.4 240 38.8
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.9e-34 151.0 225 40.9
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.9e-34 151.0 222 39.6
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.9e-34 151.0 227 41.0
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 4.9e-34 150.2 255 38.8
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 4.9e-34 150.2 240 38.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.9e-34 150.2 226 43.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 8.4e-34 149.4 307 35.8
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 8.4e-34 149.4 234 39.7
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.1e-33 149.1 227 40.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.4e-33 148.7 242 40.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.9e-33 148.3 220 38.2
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.9e-33 148.3 221 39.8
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.9e-33 148.3 221 39.8
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.9e-33 148.3 221 39.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.9e-33 148.3 301 34.6
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.5e-33 147.9 219 40.2
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.2e-33 147.1 218 40.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 7.1e-33 146.4 221 40.7
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 9.3e-33 146.0 229 40.2
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 9.3e-33 146.0 227 42.3
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 9.3e-33 146.0 216 41.7
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.6e-32 145.2 227 40.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.5e-32 144.1 226 41.2
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.5e-32 144.1 229 40.2
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 4.6e-32 143.7 219 39.3
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 7.9e-32 142.9 222 40.5
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 7.9e-32 142.9 222 40.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 7.9e-32 142.9 290 33.8
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.9e-32 142.9 219 38.8
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.9e-32 142.9 303 34.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.0e-31 142.5 334 33.5
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.8e-31 141.7 320 30.6
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.3e-31 141.4 226 41.2
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.3e-31 141.4 246 36.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-31 141.0 241 38.2
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 5.1e-31 140.2 241 37.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 6.7e-31 139.8 219 40.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.7e-31 139.8 224 37.9
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.7e-31 139.4 290 34.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.5e-30 138.7 220 38.2
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.5e-30 138.7 213 40.4
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.5e-30 138.7 222 37.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.5e-30 138.7 216 39.4
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.9e-30 138.3 200 40.5
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.5e-30 137.9 252 35.3
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.5e-30 137.9 216 39.8
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.3e-30 137.5 241 36.9
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.3e-30 137.5 468 26.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 5.7e-30 136.7 292 34.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 7.4e-30 136.3 477 27.5
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.3e-29 135.6 222 35.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.3e-29 135.6 309 33.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-29 135.6 225 35.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.3e-29 135.6 215 39.1
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 2.8e-29 134.4 218 38.1
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 6.3e-29 133.3 219 37.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.2e-29 132.9 258 34.9
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-28 132.1 223 36.3
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 3.1e-28 131.0 284 32.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 5.3e-28 130.2 230 34.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.2e-27 129.0 224 36.6
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.5e-27 128.6 218 33.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.5e-27 128.6 217 36.4
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-27 128.6 212 36.3
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.6e-27 127.9 218 34.9
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.4e-27 127.5 229 34.9
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.5e-27 127.1 286 31.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 7.6e-27 126.3 219 35.2
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 5.0e-26 123.6 227 34.4
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.5e-26 123.2 225 38.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.9e-25 121.7 235 32.8
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.9e-25 121.7 203 36.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 7.2e-25 119.8 354 29.9
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 9.3e-25 119.4 203 34.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.6e-24 117.1 242 32.2
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.0e-23 115.9 287 32.8
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.0e-23 114.4 154 47.4
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 9.7e-22 109.4 216 33.8
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.1e-17 95.9 169 34.3
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.6e-16 90.9 176 33.0
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.4e-14 84.0 153 32.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.7e-14 83.6 126 37.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.3e-13 80.1 77 55.8
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 8.2e-13 79.7 108 37.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.4e-12 79.0 118 40.7
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 9.1e-12 76.3 129 36.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-10 72.0 97 39.2
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-10 72.0 97 39.2


User provided reference genes

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