Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 0.0e+00 2964.1 1483 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 8.9e-274 948.0 1522 40.1
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 3.5e-270 936.0 1551 38.3
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 9.3e-239 831.6 1499 36.8
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 1.7e-237 827.4 1488 37.5
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 5.6e-236 822.4 1526 37.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 6.9e-234 815.5 1508 36.9
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 9.0e-234 815.1 1478 37.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 1.7e-232 810.8 1473 37.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.7e-232 810.8 1498 37.0
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 4.9e-232 809.3 1480 37.2
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 4.9e-232 809.3 1478 36.6
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 1.4e-231 807.7 1492 37.1
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 2.4e-231 807.0 1507 36.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 4.2e-231 806.2 1465 36.9
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 7.1e-231 805.4 1493 36.6
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 2.7e-230 803.5 1465 37.5
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 3.5e-230 803.1 1473 37.2
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 3.5e-230 803.1 1471 37.4
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 1.0e-229 801.6 1503 36.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 6.6e-229 798.9 1511 37.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 1.5e-228 797.7 1469 37.2
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 1.5e-228 797.7 1484 36.4
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 2.5e-228 797.0 1503 36.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 2.5e-228 797.0 1483 36.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 4.3e-228 796.2 1489 36.5
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 5.6e-228 795.8 1525 36.3
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 1.3e-227 794.7 1500 36.3
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 1.6e-227 794.3 1466 37.2
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 2.1e-227 793.9 1507 37.5
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 2.8e-227 793.5 1497 36.7
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 8.1e-227 792.0 1480 36.7
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 8.1e-227 792.0 1474 36.4
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 1.1e-226 791.6 1490 36.0
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 1.4e-226 791.2 1491 36.3
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 4.0e-226 789.6 1484 36.9
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.0e-226 788.5 1499 37.0
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 9.0e-226 788.5 1489 37.0
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 1.5e-225 787.7 1514 36.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 2.0e-225 787.3 1510 35.6
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.6e-225 786.9 1503 37.1
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 3.4e-225 786.6 1490 36.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 3.4e-225 786.6 1507 36.7
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.9e-224 783.5 1485 36.6
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 3.8e-224 783.1 1470 37.0
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 1.1e-223 781.6 1484 35.9
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 2.4e-223 780.4 1501 36.4
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 5.5e-223 779.2 1467 37.2
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 3.5e-222 776.5 1579 34.6
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 6.0e-222 775.8 1495 36.7
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 1.0e-221 775.0 1497 36.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 1.0e-221 775.0 1498 37.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 3.9e-221 773.1 1540 35.3
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 5.1e-221 772.7 1489 36.3
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.5e-220 770.4 1483 35.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 9.6e-220 768.5 1484 36.5
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 9.6e-220 768.5 1498 35.2
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 3.7e-219 766.5 1480 35.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 6.2e-219 765.8 1478 36.4
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 1.1e-218 765.0 1456 35.5
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.4e-218 764.6 1506 36.3
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 1.4e-218 764.6 1486 36.6
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 6.5e-216 755.7 1496 36.0
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 2.1e-214 750.7 1498 35.2
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 2.7e-214 750.4 1561 34.3
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 6.0e-214 749.2 1486 35.2
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 6.3e-211 739.2 1469 34.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.8e-210 737.6 1464 35.4
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 4.1e-210 736.5 1555 35.0
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 1.5e-209 734.6 1448 35.8
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 1.0e-208 731.9 1547 34.1
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 1.7e-208 731.1 1509 34.9
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 2.5e-207 727.2 1418 36.2
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 4.2e-207 726.5 1486 36.1
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 3.5e-206 723.4 1465 34.9
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 5.1e-205 719.5 1508 34.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 7.4e-204 715.7 1419 35.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 4.5e-201 706.4 1480 33.8
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.2e-195 687.6 1579 33.4
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.8e-195 687.2 1137 39.4
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.1e-194 685.3 1186 38.1
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.8e-187 660.6 1236 37.7
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 3.1e-186 657.1 1085 38.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 2.0e-185 654.4 1258 35.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 8.5e-184 649.0 1486 32.7
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 5.0e-176 623.2 981 39.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 4.8e-171 606.7 957 39.0
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 4.5e-161 573.5 1432 32.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 7.8e-153 546.2 1145 34.7
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 9.5e-151 539.3 1154 34.9
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.0e-149 533.9 824 41.5
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.3e-141 508.1 758 39.8
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.9e-138 498.4 1037 36.6
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 6.2e-134 483.4 1486 29.0
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.4e-130 470.3 926 37.6
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.2e-116 426.0 619 40.7
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 9.3e-114 416.4 630 40.3
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.4e-108 397.9 945 34.3
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.9e-104 384.4 602 40.2
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.3e-103 381.3 1274 29.0
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 4.8e-102 377.5 589 39.4
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 4.5e-100 370.9 826 33.1
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 4.6e-97 360.9 931 32.5
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.5e-87 328.6 851 32.4
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.3e-75 289.7 603 34.5
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.3e-75 289.7 1682 24.6
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.9e-74 285.8 711 35.2
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-67 260.4 777 29.3
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.5e-66 259.6 326 43.6
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.9e-58 232.6 1285 24.1
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.0e-51 208.0 312 40.4
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 6.3e-46 191.0 340 37.1
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 4.5e-44 184.9 355 35.2
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 5.9e-44 184.5 454 32.6
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.5e-42 179.1 366 38.5
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 3.0e-40 172.2 328 37.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 3.0e-35 155.6 194 44.3
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 4.4e-31 141.7 179 43.6
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 3.0e-27 129.0 221 36.2
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-27 129.0 254 31.5
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.4e-21 108.2 164 40.9
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 7.1e-21 107.8 219 34.7
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.8e-20 104.4 158 38.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.1e-17 96.3 273 33.0
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 4.7e-17 95.1 258 31.0
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 2.6e-15 89.4 86 48.8
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 3.4e-15 89.0 236 33.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 1.1e-13 84.0 111 38.7
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.9e-13 83.2 105 43.8
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 1.9e-13 83.2 241 31.1
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 5.4e-13 81.6 133 39.1
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-12 80.1 193 26.4
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 2.7e-12 79.3 74 48.6
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.7e-12 79.3 269 30.9
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 6.6e-11 74.7 179 31.3
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-10 72.0 610 23.3
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 9.6e-10 70.9 119 32.8
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-09 70.1 94 42.6
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 1.1e-08 67.4 94 41.5
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.8e-08 66.6 192 23.4
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.0e-07 63.2 86 39.5
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.7e-06 60.1 172 29.7


User provided reference genes

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