Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 8.5e-128 460.3 225 100.0
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.3e-75 287.0 177 78.0
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 4.3e-71 271.9 207 63.3
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 3.6e-70 268.9 199 64.3
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 1.1e-69 267.3 202 64.9
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 2.4e-69 266.2 203 62.6
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 3.1e-69 265.8 212 63.2
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 5.2e-69 265.0 199 63.3
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 6.8e-69 264.6 212 62.7
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 8.9e-69 264.2 202 64.4
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 1.2e-68 263.8 211 63.0
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.5e-68 263.5 199 64.3
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.6e-68 262.7 199 63.8
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 2.6e-68 262.7 200 64.0
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 3.4e-68 262.3 199 62.8
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 4.4e-68 261.9 200 62.5
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 7.6e-68 261.2 215 60.9
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 7.6e-68 261.2 199 63.3
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 7.6e-68 261.2 199 64.3
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 7.6e-68 261.2 208 62.5
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 7.6e-68 261.2 208 60.6
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 7.6e-68 261.2 200 63.5
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 7.6e-68 261.2 203 63.1
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 9.9e-68 260.8 199 62.8
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 9.9e-68 260.8 200 63.0
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 9.9e-68 260.8 212 62.3
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.7e-67 260.0 199 62.8
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.7e-67 260.0 203 61.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 2.2e-67 259.6 199 62.8
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 2.2e-67 259.6 200 63.5
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 2.9e-67 259.2 200 63.0
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 3.8e-67 258.8 200 63.5
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 3.8e-67 258.8 198 64.1
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 3.8e-67 258.8 200 63.0
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 4.9e-67 258.5 210 59.0
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 6.4e-67 258.1 199 62.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 6.4e-67 258.1 200 63.0
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 6.4e-67 258.1 200 62.5
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 8.4e-67 257.7 200 64.5
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 8.4e-67 257.7 200 63.5
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 1.1e-66 257.3 198 63.1
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.4e-66 256.9 200 62.5
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.9e-66 256.5 200 63.5
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 1.9e-66 256.5 200 63.5
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 2.4e-66 256.1 200 62.0
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 3.2e-66 255.8 200 62.0
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 4.2e-66 255.4 202 59.4
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 5.4e-66 255.0 199 60.3
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 9.3e-66 254.2 213 59.2
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.2e-65 253.8 199 60.8
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.2e-65 253.8 247 52.6
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.2e-65 253.8 199 63.3
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.6e-65 253.4 200 62.0
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 2.1e-65 253.1 202 61.4
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 2.7e-65 252.7 205 60.5
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 2.7e-65 252.7 205 60.5
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 2.7e-65 252.7 200 62.5
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.7e-65 252.7 200 62.0
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 2.7e-65 252.7 200 61.5
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 3.5e-65 252.3 200 61.5
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 4.6e-65 251.9 198 61.6
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 4.6e-65 251.9 200 60.5
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 4.6e-65 251.9 200 61.5
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.0e-65 251.5 200 60.0
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 6.0e-65 251.5 200 61.0
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 6.0e-65 251.5 200 62.5
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 1.0e-64 250.8 199 58.3
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 1.0e-64 250.8 216 59.7
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.0e-64 250.8 200 61.0
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 1.0e-64 250.8 200 61.0
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 1.7e-64 250.0 199 60.8
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 3.0e-64 249.2 200 59.0
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 3.9e-64 248.8 198 61.1
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 3.9e-64 248.8 217 58.1
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 5.1e-64 248.4 200 61.0
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 5.1e-64 248.4 195 65.1
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 5.1e-64 248.4 198 60.1
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 6.6e-64 248.1 200 61.5
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 8.7e-64 247.7 221 56.6
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 1.1e-63 247.3 200 59.0
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.5e-63 246.9 198 61.6
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 2.5e-63 246.1 203 61.1
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 2.5e-63 246.1 203 61.6
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 3.3e-63 245.7 200 58.5
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 3.3e-63 245.7 198 60.6
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 3.3e-63 245.7 198 58.1
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 5.6e-63 245.0 224 54.9
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 7.3e-63 244.6 222 55.4
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 7.3e-63 244.6 201 60.2
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 9.6e-63 244.2 214 57.9
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 1.3e-62 243.8 221 56.6
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 1.3e-62 243.8 200 59.5
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 6.2e-62 241.5 220 59.1
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 6.2e-62 241.5 228 56.6
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 8.1e-62 241.1 201 60.7
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.1e-61 240.7 233 54.9
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 4.0e-61 238.8 198 57.6
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.9e-61 238.0 188 62.8
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 3.8e-59 232.3 200 60.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 3.2e-58 229.2 203 56.7
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.7e-57 226.1 200 55.5
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 3.5e-57 225.7 200 55.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 4.8e-54 215.3 206 52.9
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.1e-50 204.1 163 62.0
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 9.3e-50 201.1 204 50.0
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.8e-48 196.8 163 59.5
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 4.5e-44 182.2 195 50.8
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 7.9e-41 171.4 137 60.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 6.5e-35 151.8 144 56.9
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 5.3e-29 132.1 103 66.0
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.9e-21 105.1 106 51.9
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 6.1e-17 92.0 209 34.0
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 3.0e-16 89.7 101 50.5
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 2.6e-15 86.7 70 54.3
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 4.8e-14 82.4 68 60.3
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 2.4e-13 80.1 58 62.1
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 2.0e-12 77.0 66 57.6
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.0e-11 72.4 119 38.7
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.4e-07 59.3 56 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 5.7e-07 58.9 40 65.0
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 9.7e-07 58.2 36 72.2
Atru.chr10.2000 Acer truncatum HOM05D004176 ORTHO05D004845 1.7e-06 57.4 160 30.6
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 6.3e-06 55.5 152 28.3
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 8.2e-06 55.1 189 25.4
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 8.2e-06 55.1 185 30.8
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 8.2e-06 55.1 154 30.5
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 8.2e-06 55.1 39 64.1


User provided reference genes

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