Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 7.4e-178 627.1 318 100.0
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 3.7e-68 262.7 263 53.6
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 5.9e-66 255.4 232 55.6
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 1.7e-65 253.8 232 54.7
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 5.0e-65 252.3 235 56.2
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 8.5e-65 251.5 232 53.4
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 8.5e-65 251.5 267 50.9
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.9e-64 250.4 266 50.0
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 5.5e-64 248.8 243 52.7
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 5.5e-64 248.8 232 53.9
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 7.2e-64 248.4 232 53.9
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 1.2e-63 247.7 232 55.2
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 1.6e-63 247.3 237 54.0
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 2.1e-63 246.9 253 52.2
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 4.7e-63 245.7 227 54.2
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 4.7e-63 245.7 228 55.3
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 4.7e-63 245.7 232 53.9
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 6.1e-63 245.4 232 53.9
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 6.1e-63 245.4 228 55.7
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 7.9e-63 245.0 253 51.4
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 7.9e-63 245.0 228 55.3
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 7.9e-63 245.0 228 55.3
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.4e-62 244.2 228 54.4
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 1.4e-62 244.2 227 55.1
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 1.8e-62 243.8 247 51.4
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 2.3e-62 243.4 232 55.2
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.3e-62 243.4 231 54.5
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 2.3e-62 243.4 253 51.0
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 2.3e-62 243.4 231 54.5
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 3.0e-62 243.0 237 54.0
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 3.0e-62 243.0 231 55.0
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.0e-62 243.0 231 55.0
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 3.0e-62 243.0 228 53.9
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.7e-62 241.9 239 53.1
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 6.7e-62 241.9 228 54.8
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 8.8e-62 241.5 237 53.2
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 8.8e-62 241.5 231 54.5
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 8.8e-62 241.5 254 52.8
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.1e-61 241.1 232 52.6
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.1e-61 241.1 244 52.0
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.1e-61 241.1 234 53.4
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 1.5e-61 240.7 237 53.2
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.5e-61 240.7 232 52.6
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.5e-61 240.7 231 53.7
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.5e-61 240.7 228 53.5
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 2.6e-61 240.0 234 51.7
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 2.6e-61 240.0 230 53.5
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 2.6e-61 240.0 228 53.5
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 3.3e-61 239.6 232 52.2
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 3.3e-61 239.6 228 54.8
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 3.3e-61 239.6 228 53.9
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 3.3e-61 239.6 228 54.4
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 4.4e-61 239.2 233 54.9
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 7.4e-61 238.4 245 51.0
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 7.4e-61 238.4 227 54.2
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 9.7e-61 238.0 230 52.2
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.3e-60 237.7 232 53.4
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.7e-60 237.3 233 54.5
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 2.2e-60 236.9 227 52.9
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 3.7e-60 236.1 235 50.6
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 4.8e-60 235.7 228 52.6
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 6.3e-60 235.3 231 51.9
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 6.3e-60 235.3 243 52.7
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.8e-59 233.8 246 50.8
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 1.8e-59 233.8 241 51.5
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 2.4e-59 233.4 231 53.2
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 3.1e-59 233.0 214 54.2
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 3.1e-59 233.0 227 52.4
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 3.1e-59 233.0 228 52.2
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.1e-59 232.6 232 52.2
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 5.3e-59 232.3 234 51.3
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 5.3e-59 232.3 228 51.8
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 7.0e-59 231.9 236 51.7
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 9.1e-59 231.5 241 49.8
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 1.5e-58 230.7 220 52.7
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 1.3e-57 227.6 214 53.7
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 1.3e-57 227.6 214 56.5
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.3e-57 227.6 236 53.4
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 1.7e-57 227.3 214 54.2
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 2.2e-57 226.9 241 49.4
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.9e-57 226.5 213 55.4
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 2.9e-57 226.5 213 55.4
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 3.8e-57 226.1 218 51.8
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 5.0e-57 225.7 243 51.0
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 8.5e-57 224.9 249 47.8
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 8.5e-57 224.9 249 47.8
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 5.5e-56 222.2 244 50.4
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 2.1e-55 220.3 228 51.8
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.0e-54 218.0 228 52.2
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 1.4e-54 217.6 217 52.5
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 1.3e-52 211.1 199 51.8
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 2.1e-47 193.7 202 51.5
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 3.6e-47 193.0 185 53.5
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 1.0e-46 191.4 190 53.2
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 3.0e-46 189.9 194 50.5
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 3.0e-46 189.9 233 44.2
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.0e-45 187.2 189 52.4
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 2.0e-45 187.2 231 43.7
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 5.3e-43 179.1 238 41.2
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 1.6e-42 177.6 190 51.6
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 5.2e-38 162.5 231 40.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 5.7e-37 159.1 255 36.9
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 7.0e-35 152.1 133 59.4
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.7e-33 147.5 206 44.2
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 2.5e-24 117.1 134 48.5
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.3e-20 104.8 94 53.2
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 3.3e-16 90.1 112 42.9
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 7.3e-16 89.0 187 34.8
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 9.5e-16 88.6 89 52.8
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 4.7e-07 59.7 45 53.3


User provided reference genes

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