Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_2320 Physcomitrium patens HOM05D000261 ORTHO05D312953 0.0e+00 1145.6 550 100.0
Cpa.g.sc13.8 Carica papaya HOM05D000261 ORTHO05D001168 9.3e-27 125.9 406 24.9
Pp3c15_8690 Physcomitrium patens HOM05D000261 ORTHO05D001168 1.2e-26 125.6 381 27.3
Pp3c21_12290 Physcomitrium patens HOM05D000261 ORTHO05D001168 3.5e-26 124.0 412 27.4
CARHR039090 Cardamine hirsuta HOM05D000261 ORTHO05D001168 7.9e-26 122.9 393 26.5
A05p20800 Brassica napus HOM05D000261 ORTHO05D001168 5.1e-25 120.2 395 24.6
BcaC05g27542 Brassica carinata HOM05D000261 ORTHO05D001168 1.1e-24 119.0 404 24.5
BraA05t20986Z Brassica rapa HOM05D000261 ORTHO05D001168 1.1e-24 119.0 393 24.4
BcaB02g11295 Brassica carinata HOM05D000261 ORTHO05D001168 1.5e-24 118.6 397 23.7
C05p35270 Brassica napus HOM05D000261 ORTHO05D001168 2.5e-24 117.9 396 24.2
BolC5t32241H Brassica oleracea HOM05D000261 ORTHO05D001168 2.5e-24 117.9 396 24.2
AT1G49050 Arabidopsis thaliana HOM05D000261 ORTHO05D001168 4.3e-24 117.1 398 25.6
MBI19_g21651_MAGBIO Magnolia biondii HOM05D000261 ORTHO05D001168 7.4e-24 116.3 398 24.4
Manes.05G138500 Manihot esculenta HOM05D000261 ORTHO05D001168 9.6e-24 115.9 410 24.6
Carub.0001s3823 Capsella rubella HOM05D000261 ORTHO05D001168 1.6e-23 115.2 398 25.6
PSO063G6351 Papaver somniferum HOM05D000261 ORTHO05D001168 2.1e-23 114.8 380 25.3
SEGI_20069 Sequoiadendron giganteum HOM05D000261 ORTHO05D001168 2.8e-23 114.4 396 24.2
TAR629G2210 Trochodendron aralioides HOM05D000261 ORTHO05D001168 4.8e-23 113.6 405 22.2
Thhalv10011346m.g Eutrema salsugineum HOM05D000261 ORTHO05D001168 6.2e-23 113.2 411 25.1
PSO782G1470 Papaver somniferum HOM05D000261 ORTHO05D001168 1.1e-22 112.5 381 23.9
Duzib068G0905 Durio zibethinus HOM05D000261 ORTHO05D001168 1.4e-22 112.1 398 25.4
AL1G55930 Arabidopsis lyrata HOM05D000261 ORTHO05D001168 1.8e-22 111.7 395 24.8
MSTRG.4554 Avicennia marina HOM05D000261 ORTHO05D001168 2.4e-22 111.3 388 23.2
Aqoxy3G03944 Aquilegia oxysepala HOM05D000261 ORTHO05D001168 3.1e-22 110.9 404 24.5
ClCG04G011200 Citrullus lanatus HOM05D000261 ORTHO05D001168 3.1e-22 110.9 392 24.7
Pp3c15_4820 Physcomitrium patens HOM05D000261 ORTHO05D001168 4.0e-22 110.5 391 26.3
Sp1g35960 Schrenkiella parvula HOM05D000261 ORTHO05D001168 5.3e-22 110.2 412 24.3
Thecc.03G033100 Theobroma cacao HOM05D000261 ORTHO05D001168 5.3e-22 110.2 408 24.8
ATR0564G218 Amborella trichopoda HOM05D000261 ORTHO05D001168 1.2e-21 109.0 409 23.7
Aa31LG10G4890 Aethionema arabicum HOM05D000261 ORTHO05D001168 1.5e-21 108.6 406 25.6
QL10p025000 Quercus lobata HOM05D000261 ORTHO05D001168 2.0e-21 108.2 389 24.4
Sed0007266 Sechium edule HOM05D000261 ORTHO05D001168 2.0e-21 108.2 387 24.8
TWI15G0250 Tripterygium wilfordii HOM05D000261 ORTHO05D001168 2.0e-21 108.2 406 24.9
CsaV3_1G006550 Cucumis sativus L. HOM05D000261 ORTHO05D001168 4.5e-21 107.1 378 25.1
Duzib205G0941 Durio zibethinus HOM05D000261 ORTHO05D001168 4.5e-21 107.1 406 24.1
PGSC0003DMG400004069 Solanum tuberosum HOM05D000261 ORTHO05D001168 4.5e-21 107.1 409 24.9
vmacro17666 Vaccinium macrocarpon HOM05D000261 ORTHO05D001168 5.8e-21 106.7 388 22.4
Os02g0730700 Oryza sativa ssp. japonica HOM05D000261 ORTHO05D001168 7.6e-21 106.3 397 25.2
CAN.G423.2 Capsicum annuum HOM05D000261 ORTHO05D001168 1.0e-20 105.9 405 24.7
Gohir.A11G005900 Gossypium hirsutum HOM05D000261 ORTHO05D001168 1.0e-20 105.9 392 24.2
Migut.D01464 Erythranthe guttata HOM05D000261 ORTHO05D001168 1.7e-20 105.1 378 22.8
MBI06_g04546_MAGBIO Magnolia biondii HOM05D000261 ORTHO05D001168 2.2e-20 104.8 411 22.9
MELO3C002082.2 Cucumis melo HOM05D000261 ORTHO05D001168 2.9e-20 104.4 378 24.9
Solyc06g069190.4 Solanum lycopersicum HOM05D000261 ORTHO05D001168 4.9e-20 103.6 397 25.4
Ciclev10019473m.g Citrus clementina HOM05D000261 ORTHO05D001168 6.5e-20 103.2 409 23.0
Potri.015G053300 Populus trichocarpa HOM05D000261 ORTHO05D001168 6.5e-20 103.2 409 23.5
Peaxi162Scf00013g00933 Petunia axillaris HOM05D000261 ORTHO05D001168 8.4e-20 102.8 409 24.7
Sopen06g026460 Solanum pennellii HOM05D000261 ORTHO05D001168 1.1e-19 102.4 396 24.7
Gorai.007G006200 Gossypium raimondii HOM05D000261 ORTHO05D001168 1.4e-19 102.1 392 24.2
CiPaw.16G085400 Carya illinoinensis HOM05D000261 ORTHO05D001168 1.9e-19 101.7 386 23.6
CDE02G0234 Ceratophyllum demersum HOM05D000261 ORTHO05D001168 1.9e-19 101.7 384 23.4
CSS0028962 Camellia sinensis var. sinensis HOM05D000261 ORTHO05D001168 3.2e-19 100.9 390 22.3
Lsat_1_v5_gn_2_12101 Lactuca sativa HOM05D000261 ORTHO05D001168 3.2e-19 100.9 375 23.2
THA.LOC104820399 Tarenaya hassleriana HOM05D000261 ORTHO05D001168 3.2e-19 100.9 395 24.3
COL.COLO4_04352 Corchorus olitorius HOM05D000261 ORTHO05D001168 4.2e-19 100.5 425 23.8
Eucgr.K02213 Eucalyptus grandis HOM05D000261 ORTHO05D001168 4.2e-19 100.5 385 23.1
Atru.chr9.807 Acer truncatum HOM05D000261 ORTHO05D001168 7.1e-19 99.8 406 22.4
Gohir.D11G005000 Gossypium hirsutum HOM05D000261 ORTHO05D001168 7.1e-19 99.8 392 24.0
SEGI_07865 Sequoiadendron giganteum HOM05D000261 ORTHO05D001168 9.3e-19 99.4 410 26.1
Lj5A147T40 Lonicera japonica HOM05D000261 ORTHO05D001168 1.2e-18 99.0 382 25.7
Hma1.2p1_1001F.1_g246540 Hydrangea macrophylla HOM05D000261 ORTHO05D001168 1.6e-18 98.6 388 21.6
HanXRQChr10g0291991 Helianthus annuus HOM05D000261 ORTHO05D001168 3.5e-18 97.4 392 24.0
Actinidia39821 Actinidia chinensis HOM05D000261 ORTHO05D001168 7.9e-18 96.3 390 22.8
ECA238G3731 Erigeron canadensis HOM05D000261 ORTHO05D001168 7.9e-18 96.3 389 23.4
Zm00001eb408250 Zea mays HOM05D000261 ORTHO05D001168 1.0e-17 95.9 397 24.7
Sc16g0009610 Simmondsia chinensis HOM05D000261 ORTHO05D001168 1.3e-17 95.5 372 23.1
GSVIVG01008267001 Vitis vinifera HOM05D000261 ORTHO05D001168 1.3e-17 95.5 391 22.5
CDE09G0692 Ceratophyllum demersum HOM05D000261 ORTHO05D001168 1.8e-17 95.1 382 21.5
SEGI_05871 Sequoiadendron giganteum HOM05D000261 ORTHO05D001168 2.3e-17 94.7 379 25.3
Nn4g23794 Nelumbo nucifera HOM05D000261 ORTHO05D001168 3.0e-17 94.4 391 22.3
HPP92_005657 Vanilla planifolia HOM05D000261 ORTHO05D001168 3.9e-17 94.0 383 24.3
Os11g0183900 Oryza sativa ssp. japonica HOM05D000261 ORTHO05D001168 5.1e-17 93.6 373 22.5
THA.LOC104819484 Tarenaya hassleriana HOM05D000261 ORTHO05D001168 1.1e-16 92.4 380 22.9
Cc04_g07260 Coffea canephora HOM05D000261 ORTHO05D001168 1.5e-16 92.0 387 22.5
SalBow7G0873 Salvia bowleyana HOM05D000261 ORTHO05D001168 1.5e-16 92.0 373 22.8
Migut.C01108 Erythranthe guttata HOM05D000261 ORTHO05D001168 1.9e-16 91.7 401 21.7
Zm00001eb091230 Zea mays HOM05D000261 ORTHO05D001168 2.5e-16 91.3 384 23.4
Lalb_Chr12g0202981 Lupinus albus HOM05D000261 ORTHO05D001168 3.3e-16 90.9 370 21.6
Aqoxy6G00252 Aquilegia oxysepala HOM05D000261 ORTHO05D001168 5.7e-16 90.1 404 23.5
Dinv09812 Davidia involucrata HOM05D000261 ORTHO05D001168 7.4e-16 89.7 426 23.0
Thhalv10018497m.g Eutrema salsugineum HOM05D000261 ORTHO05D001168 1.3e-15 89.0 368 21.5
Potri.005G179900 Populus trichocarpa HOM05D000261 ORTHO05D001168 1.3e-15 89.0 367 22.1
Os06g0268700 Oryza sativa ssp. japonica HOM05D000261 ORTHO05D001168 2.1e-15 88.2 388 22.9
Os11g0184800 Oryza sativa ssp. japonica HOM05D000261 ORTHO05D001168 2.8e-15 87.8 409 22.5
Lj4A632G47 Lonicera japonica HOM05D000261 ORTHO05D001168 4.8e-15 87.0 388 21.1
CARHR071000 Cardamine hirsuta HOM05D000261 ORTHO05D001168 6.2e-15 86.7 369 21.4
CiPaw.15G087600 Carya illinoinensis HOM05D000261 ORTHO05D001168 1.1e-14 85.9 373 22.5
Manes.18G079400 Manihot esculenta HOM05D000261 ORTHO05D001168 1.8e-14 85.1 399 21.1
Nitab4.5_0011561g0010 Nicotiana tabacum HOM05D000261 ORTHO05D001168 3.1e-14 84.3 410 24.1
Sabra02G0063800 Salix brachista HOM05D000261 ORTHO05D001168 9.0e-14 82.8 382 21.7
Aqoxy6G00251 Aquilegia oxysepala HOM05D000261 ORTHO05D001168 1.5e-13 82.0 383 20.9
Nitab4.5_0010801g0010 Nicotiana tabacum HOM05D000261 ORTHO05D001168 2.6e-13 81.3 441 23.6
Hund17444 Selenicereus undatus HOM05D000261 ORTHO05D001168 2.6e-13 81.3 372 21.2
BcaNung06344 Brassica carinata HOM05D000261 ORTHO05D001168 4.5e-13 80.5 357 22.4
Potri.002G081400 Populus trichocarpa HOM05D000261 ORTHO05D001168 7.6e-13 79.7 369 22.0
Nn1g08878 Nelumbo nucifera HOM05D000261 ORTHO05D001168 1.0e-12 79.3 389 23.7
CiPaw.16G068200 Carya illinoinensis HOM05D000261 ORTHO05D001168 1.7e-12 78.6 374 21.7
TWI34G0337 Tripterygium wilfordii HOM05D000261 ORTHO05D001168 8.4e-12 76.3 375 22.7
QL10p040580 Quercus lobata HOM05D000261 ORTHO05D001168 3.2e-11 74.3 387 21.4
Duzib116G0445 Durio zibethinus HOM05D000261 ORTHO05D001168 7.1e-11 73.2 340 21.5
Sc26g0002550 Simmondsia chinensis HOM05D000261 ORTHO05D001168 7.1e-11 73.2 371 19.9
ECA233G2795 Erigeron canadensis HOM05D000428 ORTHO05D000566 1.2e-10 72.4 331 24.8
Gorai.005G089000 Gossypium raimondii HOM05D000261 ORTHO05D001168 1.2e-10 72.4 331 22.4
PSO170G3938 Papaver somniferum HOM05D000261 ORTHO05D001168 2.1e-10 71.6 377 20.7
Gohir.D02G079700 Gossypium hirsutum HOM05D000261 ORTHO05D001168 2.7e-10 71.2 331 22.4
HanXRQChr13g0400201 Helianthus annuus HOM05D000261 ORTHO05D000566 2.7e-10 71.2 330 24.5
ECA234G2565 Erigeron canadensis HOM05D000261 ORTHO05D001168 6.1e-10 70.1 346 22.5
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 1.8e-09 68.6 330 23.0
Zm00001eb380190 Zea mays HOM05D000261 ORTHO05D001168 1.8e-09 68.6 363 21.8
Psat5g086760 Pisum sativum HOM05D000261 ORTHO05D001168 3.9e-09 67.4 379 21.9
Gohir.A02G072600 Gossypium hirsutum HOM05D000261 ORTHO05D001168 5.1e-09 67.0 331 21.5
Ah.08g211210 Amaranthus hybridus HOM05D000261 ORTHO05D000566 1.5e-08 65.5 326 21.5
BraA09t39785Z Brassica rapa HOM05D000261 ORTHO05D002902 1.5e-08 65.5 464 20.5
Gohir.A13G223700 Gossypium hirsutum HOM05D000261 ORTHO05D000566 9.7e-08 62.8 324 20.7
Gohir.D13G228500 Gossypium hirsutum HOM05D000261 ORTHO05D000566 1.6e-07 62.0 324 21.0
PGR004G2169 Punica granatum HOM05D000261 ORTHO05D000566 1.6e-07 62.0 301 23.3
Gorai.013G259200 Gossypium raimondii HOM05D000261 ORTHO05D000566 2.2e-07 61.6 324 21.0
SGA_v2.0_scaffold24G10444 Striga asiatica HOM05D000261 ORTHO05D001168 2.2e-07 61.6 413 21.8
A09p43160 Brassica napus HOM05D000261 ORTHO05D002902 2.8e-07 61.2 315 21.6
Gohir.D04G015800 Gossypium hirsutum HOM05D000040 ORTHO05D002000 2.8e-07 61.2 332 24.1
A10p18170 Brassica napus HOM05D000261 ORTHO05D000566 3.7e-07 60.8 321 20.6
QL10p024891 Quercus lobata HOM05D000261 ORTHO05D001168 3.7e-07 60.8 224 25.9
BcaC04g19605 Brassica carinata HOM05D000261 ORTHO05D000566 4.8e-07 60.5 321 20.6
C08p25140 Brassica napus HOM05D000261 ORTHO05D002902 4.8e-07 60.5 338 23.1
C09p53780 Brassica napus HOM05D000261 ORTHO05D000566 4.8e-07 60.5 321 20.6
BolC9t58253H Brassica oleracea HOM05D000261 ORTHO05D000566 4.8e-07 60.5 321 20.6
BcaB01g00643 Brassica carinata HOM05D000261 ORTHO05D002902 6.3e-07 60.1 315 22.9
BcaB08g36401 Brassica carinata HOM05D000261 ORTHO05D000566 6.3e-07 60.1 321 20.6
BraA10t43892Z Brassica rapa HOM05D000261 ORTHO05D000566 6.3e-07 60.1 321 20.6
Gorai.012G018300 Gossypium raimondii HOM05D000040 ORTHO05D002000 6.3e-07 60.1 332 24.1
GSVIVG01009385001 Vitis vinifera HOM05D000261 ORTHO05D002902 6.3e-07 60.1 310 21.9
Gohir.A05G400100 Gossypium hirsutum HOM05D000040 ORTHO05D002000 1.1e-06 59.3 332 23.8
Hund00814 Selenicereus undatus HOM05D000261 ORTHO05D000566 1.4e-06 58.9 325 22.2
Migut.N01953 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.8e-06 58.5 335 22.7
Sopen09g003400 Solanum pennellii HOM05D000261 ORTHO05D000566 1.8e-06 58.5 329 20.1
BcaB05g23183 Brassica carinata HOM05D000261 ORTHO05D002902 2.4e-06 58.2 315 22.5
Solyc09g008600.3 Solanum lycopersicum HOM05D000261 ORTHO05D000566 3.1e-06 57.8 329 20.1
AagrBONN_evm.TU.Sc2ySwM_344.527 Anthoceros agrestis HOM05D000261 ORTHO05D000566 4.1e-06 57.4 331 20.8
PGR042G0720 Punica granatum HOM05D000040 ORTHO05D001305 4.1e-06 57.4 320 25.0
QL09p023846 Quercus lobata HOM05D000040 ORTHO05D000267 4.1e-06 57.4 191 24.6
Sp6g22570 Schrenkiella parvula HOM05D000261 ORTHO05D000566 5.3e-06 57.0 321 19.9
C08p07800 Brassica napus HOM05D000261 ORTHO05D001168 6.9e-06 56.6 327 22.9
SEGI_30884 Sequoiadendron giganteum HOM05D000261 ORTHO05D001168 9.0e-06 56.2 189 26.5


User provided reference genes

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