Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_23120 Physcomitrium patens HOM05D000184 ORTHO05D000032 6.3e-115 417.5 226 100.0
Pp3c4_16540 Physcomitrium patens HOM05D000184 ORTHO05D000032 2.8e-30 136.3 126 69.0
Pp3c12_10900 Physcomitrium patens HOM05D000184 ORTHO05D000032 2.4e-29 133.3 264 41.3
Mapoly0098s0044 Marchantia polymorpha HOM05D000184 ORTHO05D000032 8.8e-16 88.2 279 33.7
AagrBONN_evm.TU.Sc2ySwM_117.1287 Anthoceros agrestis HOM05D000184 ORTHO05D000032 8.3e-14 81.6 224 35.7
SEGI_09646 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 4.1e-13 79.3 119 51.3
Nitab4.5_0000676g0220 Nicotiana tabacum HOM05D000184 ORTHO05D000032 9.1e-13 78.2 112 53.6
Pp3c3_14670 Physcomitrium patens HOM05D000184 ORTHO05D000032 5.9e-12 75.5 104 54.8
TAR636G2150 Trochodendron aralioides HOM05D000184 ORTHO05D000032 5.9e-12 75.5 237 32.9
DCAR_026609 Daucus carota HOM05D000184 ORTHO05D000032 7.7e-12 75.1 195 36.4
Pp3c21_2850 Physcomitrium patens HOM05D000184 ORTHO05D000032 7.7e-12 75.1 89 49.4
TAR365G0168 Trochodendron aralioides HOM05D000184 ORTHO05D000032 7.7e-12 75.1 114 41.2
SEGI_24367 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 2.2e-11 73.6 221 34.8
Pp3c4_20290 Physcomitrium patens HOM05D000184 ORTHO05D000032 6.5e-11 72.0 117 43.6
Gohir.D09G198800 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.5e-11 71.6 208 35.1
Pp3c18_20920 Physcomitrium patens HOM05D000184 ORTHO05D000032 8.5e-11 71.6 91 48.4
Gorai.005G033900 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.5e-10 70.1 122 39.3
Pp3c13_23440 Physcomitrium patens HOM05D000184 ORTHO05D000032 2.5e-10 70.1 72 70.8
ATR1145G045 Amborella trichopoda HOM05D000184 ORTHO05D000032 3.2e-10 69.7 220 32.7
ATR0068G078 Amborella trichopoda HOM05D000184 ORTHO05D000032 9.4e-10 68.2 124 45.2
Eucgr.A02082 Eucalyptus grandis HOM05D000184 ORTHO05D000032 9.4e-10 68.2 89 52.8
Gohir.A09G205100 Gossypium hirsutum HOM05D000184 ORTHO05D000032 9.4e-10 68.2 99 50.5
Duzib268G0666 Durio zibethinus HOM05D000184 ORTHO05D000032 1.2e-09 67.8 246 30.1
Gorai.006G222400 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.2e-09 67.8 218 33.5
Pp3c19_2940 Physcomitrium patens HOM05D000184 ORTHO05D000032 1.2e-09 67.8 117 47.9
Pp3c22_8210 Physcomitrium patens HOM05D000184 ORTHO05D000032 1.2e-09 67.8 252 31.7
Pp3c22_8217 Physcomitrium patens HOM05D000184 ORTHO05D000032 1.2e-09 67.8 252 31.7
CsaV3_3G010950 Cucumis sativus L. HOM05D000184 ORTHO05D000032 2.7e-09 66.6 223 34.1
MBI13_g31528_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 4.7e-09 65.9 212 32.1
SalBow3G2620 Salvia bowleyana HOM05D000184 ORTHO05D000032 4.7e-09 65.9 125 40.0
Lj3C414T2 Lonicera japonica HOM05D000184 ORTHO05D000032 8.0e-09 65.1 92 47.8
MBI19_g09313_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 8.0e-09 65.1 124 37.1
Atru.chr4.1708 Acer truncatum HOM05D000184 ORTHO05D000032 1.0e-08 64.7 127 44.1
TWI09G0493 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.0e-08 64.7 127 42.5
BolC8t47639H Brassica oleracea HOM05D000184 ORTHO05D000032 1.4e-08 64.3 124 38.7
Nitab4.5_0000850g0070 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.4e-08 64.3 112 41.1
A08p06780 Brassica napus HOM05D000184 ORTHO05D000032 1.8e-08 63.9 124 38.7
BraA08t32696Z Brassica rapa HOM05D000184 ORTHO05D000032 1.8e-08 63.9 124 38.7
CARHR219350 Cardamine hirsuta HOM05D000184 ORTHO05D000032 1.8e-08 63.9 198 30.3
Pp3c26_6050 Physcomitrium patens HOM05D000184 ORTHO05D000032 1.8e-08 63.9 126 45.2
Sabra17G0048700 Salix brachista HOM05D000184 ORTHO05D000032 1.8e-08 63.9 123 42.3
MELO3C006313.2 Cucumis melo HOM05D000184 ORTHO05D000032 2.3e-08 63.5 128 45.3
FAN22G2178 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.3e-08 63.5 121 43.0
THA.LOC104808715 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 3.0e-08 63.2 135 40.7
Potri.017G054800 Populus trichocarpa HOM05D000184 ORTHO05D000032 4.0e-08 62.8 124 41.9
Sabra10G0127700 Salix brachista HOM05D000184 ORTHO05D000032 4.0e-08 62.8 120 34.2
Haze_11607 Corylus avellana HOM05D002843 ORTHO05D003086 5.2e-08 62.4 221 31.2
FAN17G2338 Fragaria x ananassa HOM05D000184 ORTHO05D000032 5.2e-08 62.4 121 43.0
MBI02_g15398_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 5.2e-08 62.4 126 42.9
Manes.03G148100 Manihot esculenta HOM05D000184 ORTHO05D000032 5.2e-08 62.4 121 43.8
TAR362G1113 Trochodendron aralioides HOM05D000184 ORTHO05D000032 5.2e-08 62.4 239 31.4
Sed0023070 Sechium edule HOM05D000184 ORTHO05D000032 6.8e-08 62.0 99 50.5
TWI73G0641 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 6.8e-08 62.0 146 34.2
Cfa014918 Carpinus fangiana HOM05D000184 ORTHO05D000032 8.8e-08 61.6 227 31.3
Glyma.12G089100 Glycine max HOM05D000184 ORTHO05D000032 8.8e-08 61.6 125 35.2
Gohir.A02G023300 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.8e-08 61.6 121 42.1
Gohir.D02G030600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.8e-08 61.6 121 42.1
FAN07G1513 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-07 61.2 120 43.3
Nitab4.5_0012320g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.2e-07 61.2 181 29.8
Pp3c3_23200 Physcomitrium patens HOM05D000184 ORTHO05D000032 1.2e-07 61.2 235 33.2
Sabra16G0199200 Salix brachista HOM05D002843 ORTHO05D003086 1.2e-07 61.2 121 42.1
TWI53G1571 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.2e-07 61.2 121 43.0
Dinv29592 Davidia involucrata HOM05D000184 ORTHO05D000032 1.5e-07 60.8 220 30.9
FAN23G2232 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.5e-07 60.8 132 33.3
MD04G1008300 Malus domestica HOM05D000184 ORTHO05D000032 1.5e-07 60.8 121 41.3
Nn3g19969 Nelumbo nucifera HOM05D000184 ORTHO05D000032 1.5e-07 60.8 121 42.1
AL3G39150 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 2.0e-07 60.5 128 34.4
FvH4_4g15780 Fragaria vesca HOM05D000184 ORTHO05D000032 2.0e-07 60.5 121 42.1
FAN12G2351 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.0e-07 60.5 121 42.1
FAN26G2253 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.0e-07 60.5 129 33.3
Nitab4.5_0000381g0220 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.0e-07 60.5 181 29.3
Cc03_g07780 Coffea canephora HOM05D000184 ORTHO05D000032 2.6e-07 60.1 87 55.2
FAN07G0534 Fragaria x ananassa HOM05D000506 ORTHO05D000369 2.6e-07 60.1 207 31.4
HanXRQChr03g0090381 Helianthus annuus HOM05D000184 ORTHO05D000032 2.6e-07 60.1 91 47.3
MBI11_g04266_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.6e-07 60.1 231 30.3
RcHm_v2.0_Chr4g0439621 Rosa chinensis HOM05D000184 ORTHO05D000032 2.6e-07 60.1 119 41.2
Gohir.D08G230600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.4e-07 59.7 84 45.2
Potri.001G314800 Populus trichocarpa HOM05D000184 ORTHO05D000032 3.4e-07 59.7 121 42.1
Rhsim04G0086400 Rhododendron simsii HOM05D000184 ORTHO05D000032 3.4e-07 59.7 125 44.0
Actinidia17308 Actinidia chinensis HOM05D000184 ORTHO05D000032 5.7e-07 58.9 123 39.8
CANSAT78G0410 Cannabis sativa HOM05D000184 ORTHO05D000032 5.7e-07 58.9 80 56.2
Cfa008970 Carpinus fangiana HOM05D000506 ORTHO05D000369 5.7e-07 58.9 118 39.8
Ca_01662_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 5.7e-07 58.9 126 38.9
Gohir.A04G147200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.7e-07 58.9 91 38.5
Pp3c10_13030 Physcomitrium patens HOM05D000184 ORTHO05D000032 5.7e-07 58.9 137 43.8
QL06p024540 Quercus lobata HOM05D000184 ORTHO05D000032 5.7e-07 58.9 121 41.3
BolC3t17597H Brassica oleracea HOM05D000184 ORTHO05D000032 7.5e-07 58.5 135 34.1
CANSAT78G0240 Cannabis sativa HOM05D000184 ORTHO05D000032 7.5e-07 58.5 95 43.2
DCAR_030793 Daucus carota HOM05D000184 ORTHO05D000032 7.5e-07 58.5 120 41.7
Gohir.D04G191600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.5e-07 58.5 91 41.8
MBI15_g26852_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 7.5e-07 58.5 177 29.9
THA.LOC104821612 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 7.5e-07 58.5 129 42.6
Cpa.g.sc128.40 Carica papaya HOM05D000184 ORTHO05D000032 9.8e-07 58.2 125 38.4
Hma1.2p1_0187F.1_g082110 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 9.8e-07 58.2 231 32.5
Potri.008G087600 Populus trichocarpa HOM05D000184 ORTHO05D000032 9.8e-07 58.2 120 41.7
RcHm_v2.0_Chr4g0415391 Rosa chinensis HOM05D000184 ORTHO05D000032 9.8e-07 58.2 242 30.2
Solyc12g098370.2 Solanum lycopersicum HOM05D000184 ORTHO05D000032 9.8e-07 58.2 103 47.6
Sopen12g033150 Solanum pennellii HOM05D000184 ORTHO05D000032 9.8e-07 58.2 103 47.6
Aa31LG8G10760 Aethionema arabicum HOM05D000184 ORTHO05D000032 1.3e-06 57.8 126 40.5
MSTRG.9818 Avicennia marina HOM05D000184 ORTHO05D000032 1.3e-06 57.8 113 40.7
CARHR194820 Cardamine hirsuta HOM05D000184 ORTHO05D000032 1.3e-06 57.8 87 42.5
Ciclev10005596m.g Citrus clementina HOM05D000184 ORTHO05D000032 1.3e-06 57.8 124 39.5
Eucgr.K01476 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.3e-06 57.8 95 46.3
Lsat_1_v5_gn_6_60361 Lactuca sativa HOM05D000184 ORTHO05D000032 1.3e-06 57.8 100 50.0
Nn1g07862 Nelumbo nucifera HOM05D000184 ORTHO05D000032 1.3e-06 57.8 121 41.3
Rhsim09G0055800 Rhododendron simsii HOM05D000184 ORTHO05D000032 1.3e-06 57.8 94 48.9
Sp3g03010 Schrenkiella parvula HOM05D000184 ORTHO05D000032 1.3e-06 57.8 104 42.3
vmacro00477 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 1.3e-06 57.8 76 55.3
vmacro09151 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 1.3e-06 57.8 125 44.0
BcaB04g17663 Brassica carinata HOM05D000184 ORTHO05D000032 1.7e-06 57.4 127 41.7
Potri.019G032700 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.7e-06 57.4 114 43.9
PGR142G0109 Punica granatum HOM05D000184 ORTHO05D000032 1.7e-06 57.4 122 41.0
TAR633G1219 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.7e-06 57.4 121 41.3
AL7G42910 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 2.2e-06 57.0 132 40.2
BcaC01g03356 Brassica carinata HOM05D000184 ORTHO05D000032 2.2e-06 57.0 135 33.3
CSS0036129 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 2.2e-06 57.0 126 42.1
CANSAT64G1725 Cannabis sativa HOM05D000184 ORTHO05D000032 2.2e-06 57.0 125 38.4
ClCG05G003320 Citrullus lanatus HOM05D000184 ORTHO05D000032 2.2e-06 57.0 223 31.4
COL.COLO4_09880 Corchorus olitorius HOM05D000184 ORTHO05D000032 2.2e-06 57.0 217 30.0
MELO3C026896.2 Cucumis melo HOM05D000184 ORTHO05D000032 2.2e-06 57.0 121 40.5
Lsat_1_v5_gn_7_106661 Lactuca sativa HOM05D000184 ORTHO05D000032 2.2e-06 57.0 93 48.4
THA.LOC104821144 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 2.2e-06 57.0 120 37.5
Aa31LG5G14600 Aethionema arabicum HOM05D000184 ORTHO05D000032 2.8e-06 56.6 123 43.9
Aqoxy2G03875 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 2.8e-06 56.6 122 45.1
AT3G24120 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 2.8e-06 56.6 125 40.0
AT5G18240 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 2.8e-06 56.6 87 41.4
BcaC07g37345 Brassica carinata HOM05D000184 ORTHO05D000032 2.8e-06 56.6 121 42.1
CiPaw.01G121700 Carya illinoinensis HOM05D000184 ORTHO05D000032 2.8e-06 56.6 122 40.2
Eucgr.H00055 Eucalyptus grandis HOM05D000184 ORTHO05D000032 2.8e-06 56.6 187 31.6
FvH4_4g31230 Fragaria vesca HOM05D000184 ORTHO05D000032 2.8e-06 56.6 119 39.5
FAN12G3481 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.8e-06 56.6 119 39.5
FAN17G0546 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.8e-06 56.6 119 39.5
Prupe.1G007000 Prunus persica HOM05D000184 ORTHO05D000032 2.8e-06 56.6 121 40.5
Solyc10g083340.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 2.8e-06 56.6 124 33.9
PGSC0003DMG400004567 Solanum tuberosum HOM05D000184 ORTHO05D000032 2.8e-06 56.6 103 47.6
CARHR078160 Cardamine hirsuta HOM05D000184 ORTHO05D000032 3.7e-06 56.2 125 42.4
CARHR100080 Cardamine hirsuta HOM05D000184 ORTHO05D000032 3.7e-06 56.2 127 41.7
DCAR_024477 Daucus carota HOM05D000184 ORTHO05D000032 3.7e-06 56.2 120 42.5
Glyma.11G183400 Glycine max HOM05D000184 ORTHO05D000032 3.7e-06 56.2 86 51.2
Gorai.012G187000 Gossypium raimondii HOM05D000184 ORTHO05D000032 3.7e-06 56.2 91 47.3
Oeu016735.1 Olea europaea HOM05D000184 ORTHO05D000032 3.7e-06 56.2 123 39.0
Oeu056879.1 Olea europaea HOM05D000184 ORTHO05D000032 3.7e-06 56.2 128 40.6
PSO675G6497 Papaver somniferum HOM05D000184 ORTHO05D000032 3.7e-06 56.2 87 49.4
Sp3g21820 Schrenkiella parvula HOM05D000184 ORTHO05D000032 3.7e-06 56.2 125 39.2
CAN.G767.40 Capsicum annuum HOM05D000184 ORTHO05D000032 4.9e-06 55.8 104 48.1
Duzib177G0153 Durio zibethinus HOM05D000184 ORTHO05D000032 4.9e-06 55.8 85 42.4
ECA233G3792 Erigeron canadensis HOM05D000184 ORTHO05D000032 4.9e-06 55.8 88 52.3
HanXRQChr02g0058891 Helianthus annuus HOM05D000184 ORTHO05D000032 4.9e-06 55.8 98 49.0
Lj3g0027036 Lotus japonicus HOM05D000184 ORTHO05D000032 4.9e-06 55.8 124 41.1
MD13G1070900 Malus domestica HOM05D000184 ORTHO05D000032 4.9e-06 55.8 76 43.4
Prupe.1G275900 Prunus persica HOM05D000184 ORTHO05D000032 4.9e-06 55.8 91 48.4
A01p31060 Brassica napus HOM05D002843 ORTHO05D003086 6.3e-06 55.5 127 40.2
C01p39580 Brassica napus HOM05D002843 ORTHO05D003086 6.3e-06 55.5 125 39.2
Haze_12001 Corylus avellana HOM05D000184 ORTHO05D000032 6.3e-06 55.5 116 39.7
Glyma.02G070900 Glycine max HOM05D000184 ORTHO05D000032 6.3e-06 55.5 134 32.1
Nitab4.5_0001933g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.3e-06 55.5 126 32.5
Nitab4.5_0003610g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.3e-06 55.5 80 43.8
Sc13g0002730 Simmondsia chinensis HOM05D000184 ORTHO05D000032 6.3e-06 55.5 114 38.6
SGA_v2.0_scaffold472G52102 Striga asiatica HOM05D000184 ORTHO05D000032 6.3e-06 55.5 156 30.8
BcaB06g26587 Brassica carinata HOM05D000184 ORTHO05D000032 8.3e-06 55.1 124 38.7
BcaC05g30542 Brassica carinata HOM05D000184 ORTHO05D000032 8.3e-06 55.1 80 52.5
C05p63030 Brassica napus HOM05D000184 ORTHO05D000032 8.3e-06 55.1 80 52.5
BolC1t03907H Brassica oleracea HOM05D002843 ORTHO05D003086 8.3e-06 55.1 125 39.2
BolC5t34956H Brassica oleracea HOM05D000184 ORTHO05D000032 8.3e-06 55.1 80 52.5
Carub.0003s2438 Capsella rubella HOM05D000184 ORTHO05D000032 8.3e-06 55.1 127 40.2
CDE05G0562 Ceratophyllum demersum HOM05D000184 ORTHO05D000032 8.3e-06 55.1 112 40.2
Lsat_1_v5_gn_1_61320 Lactuca sativa HOM05D000184 ORTHO05D000032 8.3e-06 55.1 132 40.2
Lj6A558G54 Lonicera japonica HOM05D000184 ORTHO05D000032 8.3e-06 55.1 158 36.1
Manes.01G035100 Manihot esculenta HOM05D000184 ORTHO05D000032 8.3e-06 55.1 120 39.2
Peaxi162Scf00146g00719 Petunia axillaris HOM05D000184 ORTHO05D000032 8.3e-06 55.1 84 47.6
Potri.010G167901 Populus trichocarpa HOM05D000184 ORTHO05D000032 8.3e-06 55.1 120 39.2


User provided reference genes

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