Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 8.3e-174 613.6 310 100.0
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 1.5e-53 214.2 305 41.3
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.5e-53 213.4 283 39.6
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.6e-52 210.7 299 41.1
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 4.0e-51 206.1 281 40.2
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.6e-50 203.4 289 42.6
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 2.6e-50 203.4 269 41.6
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 7.5e-50 201.8 294 42.5
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.3e-49 201.1 309 38.2
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 2.2e-49 200.3 294 41.8
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 2.9e-49 199.9 294 41.5
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 3.7e-49 199.5 294 41.5
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 6.4e-49 198.7 293 41.3
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.1e-48 198.0 299 39.5
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.1e-48 198.0 307 40.1
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 1.8e-48 197.2 289 41.2
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.4e-48 196.8 291 40.5
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.4e-48 196.8 282 41.8
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.4e-48 196.8 301 41.5
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 3.2e-48 196.4 267 41.2
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.2e-48 196.4 289 40.8
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 3.2e-48 196.4 303 38.9
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 4.1e-48 196.1 313 39.6
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 5.4e-48 195.7 276 40.2
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 5.4e-48 195.7 312 41.3
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 5.4e-48 195.7 273 39.9
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 7.0e-48 195.3 298 39.6
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 7.0e-48 195.3 307 36.8
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 9.2e-48 194.9 295 40.0
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 9.2e-48 194.9 302 41.7
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 9.2e-48 194.9 307 40.1
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.2e-47 194.5 269 40.1
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 1.2e-47 194.5 307 40.4
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.6e-47 194.1 273 41.8
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.0e-47 193.7 298 41.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.0e-47 193.7 285 42.5
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 2.7e-47 193.4 287 40.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 4.6e-47 192.6 305 38.7
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 4.6e-47 192.6 279 40.1
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 6.0e-47 192.2 269 40.1
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 7.8e-47 191.8 276 39.9
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 7.8e-47 191.8 305 38.7
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.0e-46 191.4 303 40.9
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.0e-46 191.4 288 39.6
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 1.0e-46 191.4 279 40.1
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 1.3e-46 191.0 287 40.4
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 1.7e-46 190.7 303 38.6
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.7e-46 190.7 303 38.9
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.3e-46 190.3 291 39.9
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 2.3e-46 190.3 308 39.9
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 3.0e-46 189.9 272 40.8
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 3.0e-46 189.9 267 41.2
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 3.9e-46 189.5 312 39.1
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 6.6e-46 188.7 302 40.1
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 8.6e-46 188.3 305 38.4
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 1.5e-45 187.6 287 39.0
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.5e-45 187.6 277 39.4
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 1.5e-45 187.6 304 40.5
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.9e-45 187.2 283 39.6
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 1.9e-45 187.2 317 37.5
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 2.5e-45 186.8 306 37.6
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 4.3e-45 186.0 303 39.9
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 7.3e-45 185.3 281 39.5
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 9.5e-45 184.9 308 38.0
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.6e-44 184.1 303 38.6
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.1e-44 183.7 294 38.8
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 3.6e-44 183.0 225 42.2
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 3.6e-44 183.0 311 37.9
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 4.7e-44 182.6 269 38.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.1e-43 181.4 212 45.3
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.1e-43 181.4 309 38.8
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.1e-43 181.4 215 42.3
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.4e-43 181.0 211 42.7
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 1.4e-43 181.0 303 39.9
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.8e-43 180.6 307 38.4
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 1.8e-43 180.6 304 38.5
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 2.3e-43 180.3 239 41.4
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 6.8e-43 178.7 273 39.2
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 6.8e-43 178.7 303 37.6
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 8.9e-43 178.3 307 37.1
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 8.9e-43 178.3 308 39.3
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 2.0e-42 177.2 307 38.4
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 2.0e-42 177.2 347 36.0
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 2.6e-42 176.8 307 37.5
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 2.6e-42 176.8 227 43.2
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 4.4e-42 176.0 296 37.8
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 9.8e-42 174.9 303 37.3
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 9.8e-42 174.9 296 36.5
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 2.9e-41 173.3 291 37.1
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 3.7e-41 172.9 308 36.4
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 3.2e-40 169.9 275 37.8
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 3.2e-40 169.9 312 35.3
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.6e-39 167.5 298 37.2
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 7.8e-39 165.2 279 36.6
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 2.3e-38 163.7 338 35.5
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 2.8e-36 156.8 245 36.7
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 3.6e-36 156.4 280 34.6
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 4.7e-36 156.0 287 37.6
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.1e-35 154.8 285 35.1
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 8.9e-35 151.8 320 35.9
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.5e-34 151.0 197 41.6
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 5.8e-34 149.1 216 40.7
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.2e-33 147.1 325 34.8
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 8.3e-33 145.2 304 34.2
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.3e-30 137.9 252 35.3
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.2e-28 131.3 188 40.4
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 3.1e-27 126.7 206 39.8
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 4.4e-26 122.9 182 38.5
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 2.9e-25 120.2 225 34.7
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 1.6e-23 114.4 148 40.5
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 2.1e-23 114.0 290 31.0
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 1.5e-18 97.8 123 43.9
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.4e-16 91.3 162 34.6
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 2.4e-16 90.5 114 41.2
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 9.3e-16 88.6 160 36.2
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.0e-15 85.9 180 35.0
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 7.8e-15 85.5 161 36.0
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 2.3e-14 84.0 305 29.8
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 8.7e-14 82.0 154 32.5
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.5e-13 80.5 156 32.1
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.8e-11 74.3 74 52.7
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 6.9e-11 72.4 99 42.4
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.5e-10 71.2 94 42.6
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.3e-09 68.2 142 35.9
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 8.4e-09 65.5 79 39.2
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 2.7e-07 60.5 255 26.7


User provided reference genes

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