Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 6.7e-245 850.5 519 100.0
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 6.7e-245 850.5 519 100.0
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 2.8e-25 120.9 180 42.8
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 1.2e-20 105.5 173 37.0
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 3.6e-20 104.0 140 41.4
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 2.3e-19 101.3 174 38.5
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 1.1e-18 99.0 186 37.1
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 1.5e-18 98.6 137 40.1
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 2.0e-18 98.2 186 34.9
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.6e-18 97.8 196 34.7
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 4.4e-18 97.1 170 37.6
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 8.2e-17 92.8 165 37.0
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 1.1e-16 92.4 181 32.6
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 3.1e-16 90.9 188 35.1
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 4.1e-16 90.5 177 35.6
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 5.3e-16 90.1 186 36.0
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 7.0e-16 89.7 197 33.0
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 2.6e-15 87.8 154 35.7
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 5.9e-15 86.7 159 35.8
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 5.9e-15 86.7 201 31.3
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 7.7e-15 86.3 139 36.0
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 1.0e-14 85.9 145 39.3
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 1.7e-14 85.1 148 35.8
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.9e-14 84.3 140 34.3
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 2.9e-14 84.3 133 38.3
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 2.9e-14 84.3 101 45.5
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 5.0e-14 83.6 176 33.5
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 5.0e-14 83.6 149 32.9
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 6.5e-14 83.2 151 34.4
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 1.1e-13 82.4 132 39.4
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 1.1e-13 82.4 117 38.5
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 1.1e-13 82.4 202 31.2
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 1.5e-13 82.0 164 33.5
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 1.5e-13 82.0 90 46.7
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 1.9e-13 81.6 93 45.2
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 2.5e-13 81.3 170 32.4
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 2.5e-13 81.3 182 30.8
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 3.2e-13 80.9 129 36.4
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 3.2e-13 80.9 82 48.8
Cre03.g201700 Chlamydomonas reinhardtii HOM05D007068 ORTHO05D008590 5.5e-13 80.1 186 31.7
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 5.5e-13 80.1 174 33.9
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 5.5e-13 80.1 262 27.5
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 7.2e-13 79.7 127 38.6
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 7.2e-13 79.7 189 32.3
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 9.4e-13 79.3 205 31.7
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 9.4e-13 79.3 88 46.6
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 9.4e-13 79.3 131 38.2
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 1.2e-12 79.0 170 31.2
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 1.2e-12 79.0 126 38.1
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.2e-12 79.0 187 32.6
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.2e-12 79.0 207 30.0
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 1.6e-12 78.6 184 31.0
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 1.6e-12 78.6 88 45.5
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.6e-12 78.6 88 45.5
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 1.6e-12 78.6 181 33.1
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 1.6e-12 78.6 146 38.4
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 2.1e-12 78.2 175 30.3
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 2.1e-12 78.2 175 30.3
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 2.1e-12 78.2 218 29.8
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 2.1e-12 78.2 182 30.2
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 2.1e-12 78.2 181 33.7
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 2.1e-12 78.2 181 33.1
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 2.7e-12 77.8 208 29.8
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 2.7e-12 77.8 161 31.1
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 3.6e-12 77.4 133 37.6
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 3.6e-12 77.4 175 33.1
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 4.7e-12 77.0 168 32.7
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 6.1e-12 76.6 208 29.3
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 6.1e-12 76.6 188 33.0
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 8.0e-12 76.3 208 29.8
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 8.0e-12 76.3 146 37.0
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.0e-11 75.9 252 29.4
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 1.0e-11 75.9 188 31.4
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 1.4e-11 75.5 191 30.9
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 2.3e-11 74.7 243 27.6
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 3.0e-11 74.3 191 31.9
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 3.0e-11 74.3 90 43.3
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 4.0e-11 73.9 190 32.1
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 8.8e-11 72.8 175 31.4
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 8.8e-11 72.8 151 31.1
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 1.2e-10 72.4 77 49.4
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 2.0e-10 71.6 183 31.1
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 2.6e-10 71.2 133 32.3
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 4.4e-10 70.5 183 29.5
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 9.7e-10 69.3 112 37.5
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 3.7e-09 67.4 88 42.0
CBR_g21755 Chara braunii HOM05D007068 ORTHO05D008590 6.3e-09 66.6 156 31.4
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 1.1e-08 65.9 124 33.9
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 1.1e-08 65.9 145 35.2
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 1.6e-07 62.0 133 30.8
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 4.5e-07 60.5 115 31.3
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 1.7e-06 58.5 67 43.3
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 1.7e-06 58.5 133 31.6


User provided reference genes

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