Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_2190 Physcomitrium patens HOM05D012251 ORTHO05D012302 7.7e-146 520.4 249 100.0
Pp3c13_5590 Physcomitrium patens HOM05D012251 ORTHO05D012302 1.6e-87 326.6 241 66.4
Pp3c4_21870 Physcomitrium patens HOM05D012251 ORTHO05D012302 1.5e-77 293.5 234 60.7
Pp3c24_13210 Physcomitrium patens HOM05D012251 ORTHO05D012302 1.4e-46 190.7 167 56.3
Mapoly0053s0029 Marchantia polymorpha HOM05D012251 ORTHO05D012302 2.0e-21 107.1 237 33.3
Pp3c23_10020 Physcomitrium patens HOM05D028196 ORTHO05D012302 1.8e-14 84.0 109 38.5
Pp3c3_2160 Physcomitrium patens HOM05D028196 ORTHO05D012302 5.3e-14 82.4 98 41.8
Mapoly0013s0104 Marchantia polymorpha HOM05D062711 ORTHO05D012302 1.6e-13 80.9 86 45.3
CDE06G2562 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 1.3e-12 77.8 88 44.3
ATR0582G277 Amborella trichopoda HOM05D012251 ORTHO05D012302 8.5e-12 75.1 107 37.4
CDE02G0472 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 1.5e-11 74.3 87 43.7
CDE02G3644 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 2.5e-11 73.6 90 45.6
SEGI_36930 Sequoiadendron giganteum HOM05D012251 ORTHO05D012302 7.2e-11 72.0 72 45.8
TAR371G1012 Trochodendron aralioides HOM05D012251 ORTHO05D012302 9.4e-11 71.6 112 39.3
CDE09G0490 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 2.1e-10 70.5 99 44.4
Nn3g16173 Nelumbo nucifera HOM05D012251 ORTHO05D012302 3.0e-09 66.6 116 35.3
Mapoly0212s0004 Marchantia polymorpha HOM05D023407 ORTHO05D025815 8.8e-09 65.1 83 39.8
Nn1g09120 Nelumbo nucifera HOM05D001767 ORTHO05D001714 2.0e-08 63.9 68 38.2
Pp3c2_3800 Physcomitrium patens HOM05D023407 ORTHO05D025815 3.3e-08 63.2 68 39.7
Nn1g04422 Nelumbo nucifera HOM05D001767 ORTHO05D001714 4.4e-08 62.8 69 36.2
SEGI_39227 Sequoiadendron giganteum HOM05D028090 ORTHO05D012302 5.7e-08 62.4 83 42.2
SEGI_39353 Sequoiadendron giganteum HOM05D001767 ORTHO05D001714 5.7e-08 62.4 62 40.3
Glyma.14G199900 Glycine max HOM05D001767 ORTHO05D001714 1.3e-07 61.2 66 39.4
Pp3c4_21860 Physcomitrium patens HOM05D028196 ORTHO05D012302 1.3e-07 61.2 121 30.6
Manes.16G040300 Manihot esculenta HOM05D001767 ORTHO05D001714 1.7e-07 60.8 67 34.3
Phvul.006G074200 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 1.7e-07 60.8 74 36.5
CANSAT54G2108 Cannabis sativa HOM05D001767 ORTHO05D001714 2.2e-07 60.5 62 40.3
Gohir.A08G203400 Gossypium hirsutum HOM05D001767 ORTHO05D001714 2.2e-07 60.5 68 38.2
Gohir.D08G220500 Gossypium hirsutum HOM05D001767 ORTHO05D001714 2.2e-07 60.5 68 38.2
Gorai.004G234400 Gossypium raimondii HOM05D001767 ORTHO05D001714 2.2e-07 60.5 68 38.2
Phvul.008G251500 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 2.2e-07 60.5 68 38.2
MSTRG.7411 Avicennia marina HOM05D001767 ORTHO05D001714 3.7e-07 59.7 67 37.3
Ca_15012_v3 Cicer arietinum L. HOM05D001767 ORTHO05D001714 3.7e-07 59.7 63 38.1
Mapoly0171s0007 Marchantia polymorpha HOM05D018206 ORTHO05D013164 3.7e-07 59.7 82 39.0
VMungo0540G2315 Vigna mungo HOM05D001767 ORTHO05D001714 3.7e-07 59.7 74 36.5
Psat0s3744g0040 Pisum sativum HOM05D001767 ORTHO05D001714 4.8e-07 59.3 111 31.5
TAR623G0326 Trochodendron aralioides HOM05D001767 ORTHO05D001714 4.8e-07 59.3 76 34.2
ATR0564G119 Amborella trichopoda HOM05D001767 ORTHO05D001714 6.3e-07 58.9 62 37.1
BcaC07g42552 Brassica carinata HOM05D001767 ORTHO05D001714 6.3e-07 58.9 62 37.1
Glyma.18G057000 Glycine max HOM05D001767 ORTHO05D001714 6.3e-07 58.9 74 36.5
Phvul.006G175900 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 6.3e-07 58.9 68 35.3
Sed0020267 Sechium edule HOM05D001767 ORTHO05D001714 6.3e-07 58.9 81 30.9
Thecc.06G170200 Theobroma cacao HOM05D001767 ORTHO05D001714 6.3e-07 58.9 67 34.3
TPR.G25323 Trifolium pratense HOM05D001767 ORTHO05D001714 6.3e-07 58.9 62 37.1
VMungo0647G1881 Vigna mungo HOM05D001767 ORTHO05D001714 6.3e-07 58.9 68 36.8
Eucgr.B04008 Eucalyptus grandis HOM05D001767 ORTHO05D001714 8.2e-07 58.5 66 36.4
Eucgr.D00486 Eucalyptus grandis HOM05D001767 ORTHO05D001714 8.2e-07 58.5 70 34.3
Glyma.13G229500 Glycine max HOM05D001767 ORTHO05D001714 8.2e-07 58.5 68 33.8
SEGI_35510 Sequoiadendron giganteum HOM05D001767 ORTHO05D001714 8.2e-07 58.5 219 26.9
THA.LOC104800766 Tarenaya hassleriana HOM05D001767 ORTHO05D001714 8.2e-07 58.5 62 38.7
CSS0019780 Camellia sinensis var. sinensis HOM05D001767 ORTHO05D001714 1.1e-06 58.2 62 38.7
Ca_05675_v3 Cicer arietinum L. HOM05D001767 ORTHO05D001714 1.1e-06 58.2 66 36.4
MELO3C025688.2 Cucumis melo HOM05D001767 ORTHO05D001714 1.1e-06 58.2 80 32.5
Glyma.11G163800 Glycine max HOM05D001767 ORTHO05D001714 1.1e-06 58.2 62 37.1
Glyma.15G083000 Glycine max HOM05D001767 ORTHO05D001714 1.1e-06 58.2 68 33.8
Manes.18G145405 Manihot esculenta HOM05D001767 ORTHO05D001714 1.1e-06 58.2 66 34.8
PSO339G0033 Papaver somniferum HOM05D001767 ORTHO05D001714 1.1e-06 58.2 62 35.5
PSO384G2891 Papaver somniferum HOM05D001767 ORTHO05D001714 1.1e-06 58.2 62 35.5
Phvul.002G238700 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 1.1e-06 58.2 68 35.3
Aqoxy4G00332 Aquilegia oxysepala HOM05D001767 ORTHO05D001714 1.4e-06 57.8 63 31.7
Ciclev10016924m.g Citrus clementina HOM05D001767 ORTHO05D001714 1.4e-06 57.8 68 33.8
Duzib168G0893 Durio zibethinus HOM05D001767 ORTHO05D001714 1.4e-06 57.8 62 38.7
Duzib192G0143 Durio zibethinus HOM05D001767 ORTHO05D001714 1.4e-06 57.8 67 34.3
Glyma.02G232500 Glycine max HOM05D001767 ORTHO05D001714 1.4e-06 57.8 66 36.4
LjContig00141g0023494 Lotus japonicus HOM05D001767 ORTHO05D001714 1.4e-06 57.8 66 36.4
PSO017G6325 Papaver somniferum HOM05D001767 ORTHO05D001714 1.4e-06 57.8 62 35.5
PSO349G0226 Papaver somniferum HOM05D001767 ORTHO05D001714 1.4e-06 57.8 62 35.5
BcaC07g42033 Brassica carinata HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 35.5
A09p66640 Brassica napus HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 35.5
C08p50870 Brassica napus HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 35.5
BolC8t52615H Brassica oleracea HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 35.5
CARHR006650 Cardamine hirsuta HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 37.1
Duzib160G0244 Durio zibethinus HOM05D001767 ORTHO05D001714 1.8e-06 57.4 67 32.8
HanXRQChr09g0252031 Helianthus annuus HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 38.7
Medtr3g031140 Medicago truncatula HOM05D001767 ORTHO05D001714 1.8e-06 57.4 114 28.9
Pp3c1_38210 Physcomitrium patens HOM05D023407 ORTHO05D025815 1.8e-06 57.4 68 39.7
THA.LOC104815818 Tarenaya hassleriana HOM05D001767 ORTHO05D001714 1.8e-06 57.4 62 38.7
TAR452G0002 Trochodendron aralioides HOM05D001767 ORTHO05D001714 1.8e-06 57.4 69 34.8
VMungo0540G2071 Vigna mungo HOM05D001767 ORTHO05D001714 1.8e-06 57.4 68 35.3
GSVIVG01021218001 Vitis vinifera HOM05D001767 ORTHO05D001714 1.8e-06 57.4 66 34.8
BcaB02g06770 Brassica carinata HOM05D001767 ORTHO05D001714 2.4e-06 57.0 62 37.1
BcaC01g06022 Brassica carinata HOM05D001767 ORTHO05D001714 2.4e-06 57.0 62 37.1
C03p19870 Brassica napus HOM05D001767 ORTHO05D001714 2.4e-06 57.0 62 37.1
BolC3t14365H Brassica oleracea HOM05D001767 ORTHO05D001714 2.4e-06 57.0 62 37.1
COL.COLO4_31289 Corchorus olitorius HOM05D001767 ORTHO05D001714 2.4e-06 57.0 67 34.3
SalBow8G3465 Salvia bowleyana HOM05D001767 ORTHO05D001714 2.4e-06 57.0 66 36.4
AL1G17020 Arabidopsis lyrata HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
AT1G06980 Arabidopsis thaliana HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
MSTRG.14735 Avicennia marina HOM05D001767 ORTHO05D001714 3.1e-06 56.6 83 32.5
BcaC05g24662 Brassica carinata HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
A10p05490 Brassica napus HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
C05p05070 Brassica napus HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
BolC5t29278H Brassica oleracea HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
BraA10t42812Z Brassica rapa HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
Carub.0001s0626 Capsella rubella HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
Duzib235G0814 Durio zibethinus HOM05D001767 ORTHO05D001714 3.1e-06 56.6 67 32.8
Thhalv10009700m.g Eutrema salsugineum HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
HanXRQChr17g0565091 Helianthus annuus HOM05D001767 ORTHO05D001714 3.1e-06 56.6 77 33.8
Lsat_1_v5_gn_9_14641 Lactuca sativa HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 38.7
MD05G1300400 Malus domestica HOM05D001767 ORTHO05D001714 3.1e-06 56.6 69 33.3
MD10G1279500 Malus domestica HOM05D001767 ORTHO05D001714 3.1e-06 56.6 69 33.3
Manes.17G056100 Manihot esculenta HOM05D001767 ORTHO05D001714 3.1e-06 56.6 67 32.8
QL05p047295 Quercus lobata HOM05D001767 ORTHO05D001714 3.1e-06 56.6 67 32.8
RcHm_v2.0_Chr5g0071711 Rosa chinensis HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 37.1
Sp1g05680 Schrenkiella parvula HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 35.5
Sp1g25110 Schrenkiella parvula HOM05D001767 ORTHO05D001714 3.1e-06 56.6 123 25.2
Sp4g12810 Schrenkiella parvula HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 37.1
THA.LOC104826272 Tarenaya hassleriana HOM05D001767 ORTHO05D001714 3.1e-06 56.6 62 37.1
Aa31LG1G8010 Aethionema arabicum HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 35.5
arahy.Tifrunner.gnm1.ann1.S46BTS Arachis hypogaea HOM05D001767 ORTHO05D001714 4.1e-06 56.2 66 34.8
BcaB01g04121 Brassica carinata HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 35.5
BcaB03g13412 Brassica carinata HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 35.5
COL.COLO4_11161 Corchorus olitorius HOM05D001767 ORTHO05D001714 4.1e-06 56.2 66 37.9
Migut.M01036 Erythranthe guttata HOM05D001767 ORTHO05D001714 4.1e-06 56.2 67 34.3
Gohir.A03G025200 Gossypium hirsutum HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 37.1
HanXRQChr08g0228601 Helianthus annuus HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 38.7
Lj6g0015284 Lotus japonicus HOM05D001767 ORTHO05D001714 4.1e-06 56.2 68 35.3
Lalb_Chr18g0051411 Lupinus albus HOM05D001767 ORTHO05D001714 4.1e-06 56.2 66 34.8
PSO229G0155 Papaver somniferum HOM05D001767 ORTHO05D001714 4.1e-06 56.2 68 33.8
PSO675G6814 Papaver somniferum HOM05D001767 ORTHO05D001714 4.1e-06 56.2 68 33.8
Sc12g0001940 Simmondsia chinensis HOM05D001767 ORTHO05D001714 4.1e-06 56.2 62 38.7
arahy.Tifrunner.gnm1.ann1.ADC2ZV Arachis hypogaea HOM05D001767 ORTHO05D001714 5.3e-06 55.8 66 34.8
arahy.Tifrunner.gnm1.ann1.K9E1NX Arachis hypogaea HOM05D001767 ORTHO05D001714 5.3e-06 55.8 66 34.8
A07p10900 Brassica napus HOM05D001767 ORTHO05D001714 5.3e-06 55.8 70 31.4
A08p35820 Brassica napus HOM05D001767 ORTHO05D001714 5.3e-06 55.8 62 33.9
C08p02770 Brassica napus HOM05D001767 ORTHO05D001714 5.3e-06 55.8 62 33.9
BolC8t47072H Brassica oleracea HOM05D001767 ORTHO05D001714 5.3e-06 55.8 62 33.9
BraA07t28879Z Brassica rapa HOM05D001767 ORTHO05D001714 5.3e-06 55.8 70 31.4
BraA08t35489Z Brassica rapa HOM05D001767 ORTHO05D001714 5.3e-06 55.8 62 33.9
Cpa.g.sc2.349 Carica papaya HOM05D001767 ORTHO05D001714 5.3e-06 55.8 62 37.1
Cfa000611 Carpinus fangiana HOM05D001767 ORTHO05D001714 5.3e-06 55.8 67 32.8
Ciclev10003692m.g Citrus clementina HOM05D001767 ORTHO05D001714 5.3e-06 55.8 66 34.8
DCAR_005215 Daucus carota HOM05D001767 ORTHO05D001714 5.3e-06 55.8 68 35.3
DCAR_012266 Daucus carota HOM05D001767 ORTHO05D001714 5.3e-06 55.8 77 35.1
Dinv16774 Davidia involucrata HOM05D001767 ORTHO05D001714 5.3e-06 55.8 67 32.8
Glyma.08G116200 Glycine max HOM05D001767 ORTHO05D001714 5.3e-06 55.8 72 31.9
Medtr5g074290 Medicago truncatula HOM05D001767 ORTHO05D001714 5.3e-06 55.8 117 26.5
SalBow7G3903 Salvia bowleyana HOM05D001767 ORTHO05D001714 5.3e-06 55.8 67 35.8
Atru.chr10.1660 Acer truncatum HOM05D001767 ORTHO05D001714 7.0e-06 55.5 70 30.0
Atru.chr10.1661 Acer truncatum HOM05D001767 ORTHO05D001714 7.0e-06 55.5 70 30.0
EL10Ac7g15926 Beta vulgaris HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 37.1
BcaB02g10309 Brassica carinata HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
CiPaw.09G070100 Carya illinoinensis HOM05D001767 ORTHO05D001714 7.0e-06 55.5 67 32.8
FvH4_3g39820 Fragaria vesca HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
FAN11G3179 Fragaria x ananassa HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
FAN16G1848 Fragaria x ananassa HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
FAN21G2420 Fragaria x ananassa HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
FAN25G0410 Fragaria x ananassa HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 35.5
Gohir.D03G143300 Gossypium hirsutum HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 37.1
Gorai.003G150600 Gossypium raimondii HOM05D001767 ORTHO05D001714 7.0e-06 55.5 62 37.1
Potri.011G066500 Populus trichocarpa HOM05D001767 ORTHO05D001714 7.0e-06 55.5 67 32.8
Prupe.4G061900 Prunus persica HOM05D001767 ORTHO05D001714 7.0e-06 55.5 70 34.3
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 7.0e-06 55.5 75 33.3
Sc15g0005840 Simmondsia chinensis HOM05D007478 ORTHO05D001700 7.0e-06 55.5 66 42.4
FAN25G1376 Fragaria x ananassa HOM05D001767 ORTHO05D001714 9.1e-06 55.1 70 32.9
Gohir.D06G137200 Gossypium hirsutum HOM05D001767 ORTHO05D001714 9.1e-06 55.1 67 31.3
Gorai.010G159400 Gossypium raimondii HOM05D001767 ORTHO05D001714 9.1e-06 55.1 67 31.3
MBI06_g08592_MAGBIO Magnolia biondii HOM05D001767 ORTHO05D001714 9.1e-06 55.1 72 31.9
Nn2g13272 Nelumbo nucifera HOM05D001767 ORTHO05D001714 9.1e-06 55.1 62 33.9
TAR626G0913 Trochodendron aralioides HOM05D001767 ORTHO05D001714 9.1e-06 55.1 69 30.4


User provided reference genes

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