Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_21360 Physcomitrium patens HOM05D000108 ORTHO05D022320 0.0e+00 1134.4 654 100.0
Mapoly0051s0102 Marchantia polymorpha HOM05D000108 ORTHO05D022320 2.2e-152 543.5 690 53.9
MCO02G082 Micromonas commoda HOM05D000108 ORTHO05D001407 3.8e-27 127.5 542 28.0
Cre03.g168800 Chlamydomonas reinhardtii HOM05D000108 ORTHO05D001407 5.9e-12 77.0 200 30.5
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 3.8e-11 74.3 201 35.3
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 1.1e-10 72.8 201 32.3
Hund17281 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.4e-10 72.4 202 33.2
CiPaw.16G038800 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.9e-10 72.0 282 28.4
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 1.9e-10 72.0 202 35.6
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 2.5e-10 71.6 202 35.6
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 3.2e-10 71.2 202 35.1
AUR62036619 Chenopodium quinoa HOM05D000108 ORTHO05D001407 4.2e-10 70.9 232 31.5
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 4.2e-10 70.9 202 34.7
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 7.2e-10 70.1 264 31.4
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 9.4e-10 69.7 290 29.7
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 9.4e-10 69.7 202 32.7
Pp3c3_9850 Physcomitrium patens HOM05D000108 ORTHO05D001407 9.4e-10 69.7 290 26.9
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 1.2e-09 69.3 278 30.9
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 1.2e-09 69.3 201 33.8
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 1.2e-09 69.3 282 30.1
EL10As7g23764 Beta vulgaris HOM05D000108 ORTHO05D001407 2.1e-09 68.6 232 31.5
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 2.1e-09 68.6 426 25.8
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 2.7e-09 68.2 288 30.6
Medtr3g100270 Medicago truncatula HOM05D000108 ORTHO05D001407 2.7e-09 68.2 271 30.3
TPR.G14586 Trifolium pratense HOM05D000108 ORTHO05D001407 2.7e-09 68.2 350 27.7
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 3.6e-09 67.8 201 31.3
ATR0767G158 Amborella trichopoda HOM05D000108 ORTHO05D001407 3.6e-09 67.8 276 29.7
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 3.6e-09 67.8 426 25.8
LjContig00408g0023522 Lotus japonicus HOM05D000108 ORTHO05D001407 4.7e-09 67.4 218 31.2
Psat5g042080 Pisum sativum HOM05D000108 ORTHO05D001407 4.7e-09 67.4 202 32.2
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 4.7e-09 67.4 264 30.7
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 6.1e-09 67.0 231 32.0
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 6.1e-09 67.0 201 31.8
Medtr4g094882 Medicago truncatula HOM05D000108 ORTHO05D001407 6.1e-09 67.0 428 25.2
MD08G1095500 Malus domestica HOM05D000108 ORTHO05D001407 8.0e-09 66.6 287 28.2
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 8.0e-09 66.6 282 29.4
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 8.0e-09 66.6 292 29.8
Peaxi162Scf00454g00523 Petunia axillaris HOM05D000108 ORTHO05D001407 1.0e-08 66.2 201 32.3
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.4e-08 65.9 201 32.3
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.4e-08 65.9 201 32.3
CANSAT25G3670 Cannabis sativa HOM05D000108 ORTHO05D001407 1.8e-08 65.5 265 30.2
Ca_22146_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 1.8e-08 65.5 350 27.4
Gohir.A05G204800 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.8e-08 65.5 282 27.0
Psat4g085880 Pisum sativum HOM05D000108 ORTHO05D001407 1.8e-08 65.5 350 27.7
Cfa004045 Carpinus fangiana HOM05D000108 ORTHO05D001407 2.3e-08 65.1 211 33.6
Medtr3g102170 Medicago truncatula HOM05D000108 ORTHO05D001407 2.3e-08 65.1 281 27.0
arahy.Tifrunner.gnm1.ann1.SHWV95 Arachis hypogaea HOM05D000108 ORTHO05D001407 3.0e-08 64.7 281 26.7
arahy.Tifrunner.gnm1.ann1.X1JPM4 Arachis hypogaea HOM05D000108 ORTHO05D001407 3.0e-08 64.7 281 26.7
Cfa009958 Carpinus fangiana HOM05D000108 ORTHO05D001407 3.0e-08 64.7 202 31.7
Haze_18063 Corylus avellana HOM05D000108 ORTHO05D001407 3.0e-08 64.7 202 31.7
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 3.0e-08 64.7 261 27.2
TPR.G3751 Trifolium pratense HOM05D000108 ORTHO05D001407 3.0e-08 64.7 282 27.0
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 3.0e-08 64.7 288 28.8
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 3.9e-08 64.3 201 31.3
Ciclev10024786m.g Citrus clementina HOM05D000108 ORTHO05D001407 3.9e-08 64.3 202 33.2
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 3.9e-08 64.3 282 29.1
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.2e-08 63.9 201 31.8
Phvul.003G241500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 5.2e-08 63.9 426 25.8
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 6.7e-08 63.5 279 29.0
Potri.002G123500 Populus trichocarpa HOM05D000108 ORTHO05D001407 6.7e-08 63.5 280 26.8
Sabra02G0097000 Salix brachista HOM05D000108 ORTHO05D001407 6.7e-08 63.5 210 30.5
Sabra14G0016800 Salix brachista HOM05D000108 ORTHO05D001407 6.7e-08 63.5 281 26.3
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 6.7e-08 63.5 201 31.8
GSVIVG01022072001 Vitis vinifera HOM05D000108 ORTHO05D001407 6.7e-08 63.5 294 26.2
Cpa.g.sc21.164 Carica papaya HOM05D000108 ORTHO05D001407 8.8e-08 63.2 263 27.8
Oeu037621.1 Olea europaea HOM05D000108 ORTHO05D001407 8.8e-08 63.2 232 30.6
QL06p040483 Quercus lobata HOM05D000108 ORTHO05D001407 8.8e-08 63.2 202 32.7
RcHm_v2.0_Chr7g0236541 Rosa chinensis HOM05D000108 ORTHO05D001407 8.8e-08 63.2 201 31.3
Sabra07G0041700 Salix brachista HOM05D000108 ORTHO05D001407 8.8e-08 63.2 281 27.8
Duzib041G0597 Durio zibethinus HOM05D000108 ORTHO05D001407 1.1e-07 62.8 282 26.6
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 1.1e-07 62.8 283 28.3
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 1.1e-07 62.8 283 28.6
Glyma.17G239500 Glycine max HOM05D000108 ORTHO05D001407 1.1e-07 62.8 281 28.1
HanXRQChr05g0163351 Helianthus annuus HOM05D000108 ORTHO05D001407 1.1e-07 62.8 283 30.7
Lalb_Chr05g0226211 Lupinus albus HOM05D000108 ORTHO05D001407 1.1e-07 62.8 350 27.1
Potri.007G046700 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.1e-07 62.8 294 27.6
Prupe.1G431500 Prunus persica HOM05D000108 ORTHO05D001407 1.1e-07 62.8 281 26.7
CiPaw.01G014700 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.5e-07 62.4 263 30.4
Haze_18057 Corylus avellana HOM05D000108 ORTHO05D001407 1.5e-07 62.4 281 26.7
Dinv26849 Davidia involucrata HOM05D000108 ORTHO05D001407 1.5e-07 62.4 232 30.2
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 1.5e-07 62.4 264 28.8
Glyma.17G169400 Glycine max HOM05D000108 ORTHO05D001407 1.5e-07 62.4 440 24.5
MSTRG.24349 Avicennia marina HOM05D000108 ORTHO05D001407 2.0e-07 62.0 202 31.2
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 2.0e-07 62.0 201 31.3
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 2.0e-07 62.0 201 30.8
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 2.0e-07 62.0 289 28.0
Sc15g0005930 Simmondsia chinensis HOM05D000108 ORTHO05D001407 2.0e-07 62.0 295 27.1
COL.COLO4_10130 Corchorus olitorius HOM05D000108 ORTHO05D001407 2.6e-07 61.6 282 26.6
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 2.6e-07 61.6 293 27.3
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.6e-07 61.6 321 27.1
THA.LOC104801431 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 2.6e-07 61.6 202 30.7
CAN.G1030.33 Capsicum annuum HOM05D000108 ORTHO05D001407 3.3e-07 61.2 270 27.8
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 3.3e-07 61.2 293 27.3
Duzib093G1694 Durio zibethinus HOM05D000108 ORTHO05D001407 3.3e-07 61.2 294 25.9
ECA232G3828 Erigeron canadensis HOM05D000108 ORTHO05D001407 3.3e-07 61.2 201 30.3
HanXRQChr09g0267171 Helianthus annuus HOM05D000108 ORTHO05D001407 3.3e-07 61.2 280 25.0
Potri.014G024700 Populus trichocarpa HOM05D000108 ORTHO05D001407 3.3e-07 61.2 290 26.6
VMungo0251G3788 Vigna mungo HOM05D000108 ORTHO05D001407 3.3e-07 61.2 441 25.2
ATR0762G048 Amborella trichopoda HOM05D000108 ORTHO05D001407 4.4e-07 60.8 280 26.1
Manes.18G040600 Manihot esculenta HOM05D000108 ORTHO05D001407 4.4e-07 60.8 281 26.7
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 4.4e-07 60.8 280 26.8
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 4.4e-07 60.8 281 28.5
Thecc.08G002500 Theobroma cacao HOM05D000108 ORTHO05D001407 4.4e-07 60.8 282 26.6
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.7e-07 60.5 349 26.1
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 5.7e-07 60.5 432 26.6
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 5.7e-07 60.5 289 27.7
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 5.7e-07 60.5 289 27.7
Glyma.04G041300 Glycine max HOM05D000108 ORTHO05D001407 5.7e-07 60.5 281 28.1
Hma1.2p1_0017F.1_g011760 Hydrangea macrophylla HOM05D000108 ORTHO05D001407 5.7e-07 60.5 202 29.2
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 5.7e-07 60.5 201 31.8
TAR625G0648 Trochodendron aralioides HOM05D000108 ORTHO05D001407 5.7e-07 60.5 202 31.2
Eucgr.F02315 Eucalyptus grandis HOM05D000108 ORTHO05D001407 7.4e-07 60.1 232 28.9
FvH4_2g33960 Fragaria vesca HOM05D000108 ORTHO05D001407 7.4e-07 60.1 284 26.8
FAN24G0477 Fragaria x ananassa HOM05D000108 ORTHO05D001407 7.4e-07 60.1 284 26.8
Glyma.06G042400 Glycine max HOM05D000108 ORTHO05D001407 7.4e-07 60.1 281 27.8
Gohir.D05G208100 Gossypium hirsutum HOM05D000108 ORTHO05D001407 7.4e-07 60.1 282 26.2
Gorai.009G214600 Gossypium raimondii HOM05D000108 ORTHO05D001407 7.4e-07 60.1 282 26.2
Psat6g014600 Pisum sativum HOM05D000108 ORTHO05D001407 7.4e-07 60.1 233 30.5
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 9.7e-07 59.7 289 27.7
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 9.7e-07 59.7 286 28.0
FAN27G3215 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.7e-07 59.7 284 27.1
Glyma.05G085400 Glycine max HOM05D000108 ORTHO05D001407 9.7e-07 59.7 442 24.9
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 9.7e-07 59.7 201 31.3
Hund05335 Selenicereus undatus HOM05D000108 ORTHO05D001407 9.7e-07 59.7 349 25.2
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 1.3e-06 59.3 201 30.8
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 1.3e-06 59.3 201 30.8
Lj4g0015171 Lotus japonicus HOM05D000108 ORTHO05D001407 1.3e-06 59.3 323 26.0
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 1.3e-06 59.3 286 26.6
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 1.7e-06 58.9 201 30.8
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 1.7e-06 58.9 201 30.8
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 1.7e-06 58.9 409 25.7
Atru.chr13.740 Acer truncatum HOM05D000108 ORTHO05D001407 2.2e-06 58.5 281 26.3
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 2.2e-06 58.5 201 31.3
Dinv42614 Davidia involucrata HOM05D000108 ORTHO05D001407 2.2e-06 58.5 293 26.3
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 2.2e-06 58.5 295 27.1
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 2.2e-06 58.5 301 24.6
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 2.2e-06 58.5 224 30.4
Zm00001eb254290 Zea mays HOM05D000108 ORTHO05D001407 2.2e-06 58.5 201 29.4
BcaC03g17614 Brassica carinata HOM05D000108 ORTHO05D001407 2.8e-06 58.2 270 26.3
Ciclev10000125m.g Citrus clementina HOM05D000108 ORTHO05D001407 2.8e-06 58.2 281 26.7
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 2.8e-06 58.2 291 29.6
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 2.8e-06 58.2 431 24.8
RcHm_v2.0_Chr6g0308451 Rosa chinensis HOM05D000108 ORTHO05D001407 2.8e-06 58.2 282 27.7
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 2.8e-06 58.2 401 25.2
GSVIVG01009447001 Vitis vinifera HOM05D000108 ORTHO05D001407 2.8e-06 58.2 281 26.3
Aa31LG4G18520 Aethionema arabicum HOM05D000108 ORTHO05D001407 3.7e-06 57.8 202 30.2
arahy.Tifrunner.gnm1.ann1.LTM5NF Arachis hypogaea HOM05D000108 ORTHO05D001407 3.7e-06 57.8 253 28.5
FAN20G1303 Fragaria x ananassa HOM05D000108 ORTHO05D001407 3.7e-06 57.8 282 27.7
Manes.05G176400 Manihot esculenta HOM05D000108 ORTHO05D001407 3.7e-06 57.8 280 25.4
HPP92_010906 Vanilla planifolia HOM05D000108 ORTHO05D001407 3.7e-06 57.8 201 31.8
CiPaw.15G053700 Carya illinoinensis HOM05D000108 ORTHO05D001407 4.8e-06 57.4 287 25.8
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 4.8e-06 57.4 437 24.3
Oeu049769.1 Olea europaea HOM05D000108 ORTHO05D001407 4.8e-06 57.4 437 24.9
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 6.3e-06 57.0 425 24.5
PSO170G6229 Papaver somniferum HOM05D000108 ORTHO05D001407 6.3e-06 57.0 281 25.3
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 6.3e-06 57.0 280 28.2
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 6.3e-06 57.0 297 25.6
Dinv39279 Davidia involucrata HOM05D000108 ORTHO05D001407 8.2e-06 56.6 281 26.0
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 8.2e-06 56.6 301 24.6
QL02p004148 Quercus lobata HOM05D000108 ORTHO05D001407 8.2e-06 56.6 286 26.2
Sed0021093 Sechium edule HOM05D000108 ORTHO05D001407 8.2e-06 56.6 281 27.4


User provided reference genes

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