Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.0e-96 355.1 208 100.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.0e-54 217.6 143 81.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.5e-45 186.4 127 74.8
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.0e-14 83.2 162 38.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.0e-14 83.2 161 38.5
Pp3c23_970 Physcomitrium patens HOM05D000745 ORTHO05D000641 8.1e-12 75.1 84 81.0
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.4e-11 74.3 92 45.7
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.8e-11 73.9 90 46.7
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 5.2e-11 72.4 106 41.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.0e-10 70.5 117 37.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.0e-10 70.5 157 35.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 3.4e-10 69.7 55 58.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.4e-10 69.7 58 58.6
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.4e-10 69.3 52 61.5
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 7.6e-10 68.6 58 56.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 9.9e-10 68.2 148 37.2
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.9e-10 68.2 48 62.5
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.3e-09 67.8 117 37.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-09 67.8 55 54.5
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.3e-09 67.8 55 54.5
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.3e-09 67.8 49 61.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.3e-09 67.8 58 53.4
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.3e-09 67.8 49 63.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.7e-09 67.4 49 61.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.7e-09 67.4 54 55.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.7e-09 67.4 99 41.4
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.2e-09 67.0 61 54.1
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.2e-09 67.0 156 35.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.2e-09 67.0 54 59.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.2e-09 67.0 116 35.3
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.9e-09 66.6 95 45.3
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.9e-09 66.6 58 53.4
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.9e-09 66.6 46 65.2
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.9e-09 66.6 145 34.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.9e-09 66.6 93 44.1
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.7e-09 66.2 50 58.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.7e-09 66.2 91 41.8
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 3.7e-09 66.2 128 37.5
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.7e-09 66.2 92 43.5
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 4.9e-09 65.9 61 54.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.9e-09 65.9 114 40.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 6.4e-09 65.5 119 39.5
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 6.4e-09 65.5 77 48.1
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 6.4e-09 65.5 105 42.9
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 6.4e-09 65.5 84 41.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 6.4e-09 65.5 84 41.7
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 8.4e-09 65.1 55 56.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 8.4e-09 65.1 92 42.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 8.4e-09 65.1 98 41.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 8.4e-09 65.1 66 51.5
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 49 59.2
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.1e-08 64.7 154 30.5
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.1e-08 64.7 84 44.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.1e-08 64.7 61 52.5
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 67 49.3
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 152 36.2
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 152 36.2
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-08 64.7 152 36.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-08 64.7 115 38.3
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.1e-08 64.7 48 58.3
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 46 60.9
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.1e-08 64.7 57 54.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-08 64.3 46 60.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.4e-08 64.3 96 42.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.4e-08 64.3 94 41.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.9e-08 63.9 107 37.4
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.9e-08 63.9 113 40.7
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.9e-08 63.9 55 56.4
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.9e-08 63.9 48 62.5
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.9e-08 63.9 58 55.2
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.4e-08 63.5 49 59.2
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.4e-08 63.5 69 50.7
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.4e-08 63.5 69 50.7
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.4e-08 63.5 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 3.2e-08 63.2 50 56.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.2e-08 63.2 117 40.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 3.2e-08 63.2 98 41.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.2e-08 63.2 48 58.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.2e-08 63.2 43 62.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.1e-08 62.8 154 31.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.1e-08 62.8 48 58.3
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 4.1e-08 62.8 58 56.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.1e-08 62.8 114 40.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.1e-08 62.8 91 44.0
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.1e-08 62.8 94 40.4
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 4.1e-08 62.8 160 33.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.4e-08 62.4 156 31.4
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 5.4e-08 62.4 148 36.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.4e-08 62.4 106 39.6
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.4e-08 62.4 46 58.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 5.4e-08 62.4 149 35.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 7.1e-08 62.0 146 28.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 7.1e-08 62.0 146 30.8
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.1e-08 62.0 57 52.6
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 9.2e-08 61.6 39 69.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 9.2e-08 61.6 39 69.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 9.2e-08 61.6 46 60.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 9.2e-08 61.6 46 60.9
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.2e-07 61.2 85 44.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.2e-07 61.2 46 58.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.2e-07 61.2 57 54.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.6e-07 60.8 39 66.7
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.6e-07 60.8 89 40.4
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.6e-07 60.8 95 41.1
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-07 60.5 49 57.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.1e-07 60.5 51 58.8
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.1e-07 60.5 51 58.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.1e-07 60.5 167 33.5
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.7e-07 60.1 55 52.7
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-07 60.1 55 52.7
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.7e-07 60.1 55 52.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 4.6e-07 59.3 103 37.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 6.0e-07 58.9 55 52.7
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.0e-07 58.9 55 52.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 6.0e-07 58.9 62 46.8
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 6.0e-07 58.9 55 52.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 6.0e-07 58.9 103 39.8
SalBow1G3700 Salvia bowleyana HOM05D003047 ORTHO05D000627 6.0e-07 58.9 91 36.3
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 7.8e-07 58.5 57 54.4
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-06 57.4 102 37.3
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.7e-06 57.4 102 37.3
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.7e-06 57.4 110 37.3
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.3e-06 57.0 32 78.1
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 3.0e-06 56.6 109 37.6
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 3.0e-06 56.6 67 41.8
MBI13_g29637_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 3.9e-06 56.2 117 34.2
PGR004G2322 Punica granatum HOM05D003047 ORTHO05D000627 3.9e-06 56.2 78 35.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 5.1e-06 55.8 60 51.7
SalBow6G5318 Salvia bowleyana HOM05D003047 ORTHO05D000627 6.6e-06 55.5 154 26.6
Migut.K00023 Erythranthe guttata HOM05D003047 ORTHO05D000627 8.6e-06 55.1 86 36.0


User provided reference genes

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