Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.6e-227 791.2 389 100.0
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 7.3e-103 378.3 406 52.0
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.2e-98 362.5 419 47.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.2e-98 362.5 399 49.1
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.0e-97 358.6 411 49.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.1e-95 354.4 408 48.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 9.6e-95 351.3 387 49.4
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.8e-94 349.7 389 48.8
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 6.2e-94 348.6 396 49.5
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 8.1e-94 348.2 389 50.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.8e-93 347.1 346 50.3
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.4e-93 346.7 389 49.9
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 2.4e-93 346.7 397 48.1
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.4e-93 346.7 399 47.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 3.1e-93 346.3 393 48.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.1e-93 346.3 397 48.6
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 3.1e-93 346.3 393 49.4
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.3e-93 345.5 400 49.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 6.9e-93 345.1 386 48.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 9.0e-93 344.7 401 47.4
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.2e-92 344.4 399 48.6
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.6e-92 343.2 404 48.0
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 3.4e-92 342.8 403 47.6
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 3.4e-92 342.8 398 48.0
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.5e-92 342.4 406 48.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 4.5e-92 342.4 404 47.5
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 5.8e-92 342.0 399 46.4
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 5.8e-92 342.0 395 47.1
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 7.6e-92 341.7 388 47.7
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.0e-91 341.3 390 47.7
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.7e-91 340.5 399 48.4
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.2e-91 340.1 400 47.2
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.2e-91 340.1 400 48.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.2e-91 340.1 387 48.8
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.8e-91 339.3 398 48.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 6.5e-91 338.6 397 47.6
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 6.5e-91 338.6 395 48.6
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 6.5e-91 338.6 399 45.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-90 337.8 400 47.0
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.1e-90 337.8 355 49.6
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.1e-90 337.8 389 48.3
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.4e-90 337.4 395 47.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.5e-90 336.7 395 46.8
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.2e-90 336.3 402 46.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.2e-90 336.3 393 46.6
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.2e-90 336.3 389 48.6
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.5e-90 335.5 401 46.4
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 7.1e-90 335.1 407 47.2
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 9.3e-90 334.7 400 46.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.2e-89 334.3 347 50.4
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-89 334.3 408 47.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.2e-89 334.3 408 47.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.2e-89 334.3 391 46.0
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.2e-89 334.3 349 49.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.2e-89 334.3 391 46.5
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.6e-89 334.0 402 46.0
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.6e-89 334.0 396 47.5
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.6e-89 334.0 390 47.7
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.6e-89 334.0 392 47.4
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.1e-89 333.6 399 46.4
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 2.1e-89 333.6 386 48.4
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.1e-89 333.6 393 46.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.1e-89 333.6 400 47.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 2.1e-89 333.6 388 47.4
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.7e-89 333.2 352 50.9
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.7e-89 333.2 396 47.5
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.7e-89 333.2 396 47.2
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.7e-89 333.2 405 47.7
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.7e-89 333.2 387 48.3
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 3.5e-89 332.8 404 46.3
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.5e-89 332.8 397 46.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.5e-89 332.8 396 46.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.6e-89 332.4 399 47.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 4.6e-89 332.4 338 49.7
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 6.0e-89 332.0 396 47.2
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 6.0e-89 332.0 400 45.8
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 7.9e-89 331.6 410 46.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 7.9e-89 331.6 391 46.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 1.0e-88 331.3 392 46.4
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.8e-88 330.5 385 47.8
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.3e-88 330.1 409 46.5
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.3e-88 330.1 359 49.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 3.0e-88 329.7 390 47.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.0e-88 329.7 397 46.1
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.9e-88 329.3 354 48.6
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.9e-88 329.3 394 46.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 5.1e-88 328.9 399 47.1
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 6.7e-88 328.6 395 46.3
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.7e-88 328.6 390 47.4
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 8.7e-88 328.2 394 45.9
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.7e-88 328.2 400 46.8
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.1e-87 327.8 390 47.9
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.5e-87 327.4 401 45.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.5e-87 327.4 396 46.5
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.5e-87 327.4 398 47.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.5e-87 327.4 394 46.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 2.5e-87 326.6 401 45.4
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 4.3e-87 325.9 400 46.2
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 4.3e-87 325.9 395 46.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 4.3e-87 325.9 390 47.2
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 5.7e-87 325.5 401 45.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 5.7e-87 325.5 398 46.7
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.6e-87 324.7 391 46.3
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 9.6e-87 324.7 348 48.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 9.6e-87 324.7 303 53.8
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.6e-86 323.9 355 47.6
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.6e-86 323.9 395 46.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.6e-86 323.9 391 45.8
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.1e-86 323.6 395 46.3
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 4.8e-86 322.4 408 46.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 4.8e-86 322.4 365 47.4
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.2e-86 322.0 351 48.4
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 8.2e-86 321.6 348 48.3
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-85 321.2 396 46.0
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.1e-85 321.2 396 46.0
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.1e-85 321.2 352 49.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.1e-85 321.2 255 62.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 9.0e-85 318.2 337 48.4
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.0e-83 314.7 352 49.1
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 5.0e-83 312.4 360 46.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.5e-82 308.9 395 44.6
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 7.1e-82 308.5 345 47.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 7.1e-82 308.5 394 43.7
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.1e-81 307.0 390 45.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.7e-81 306.6 453 41.5
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.7e-80 302.0 249 58.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.9e-79 300.4 388 44.1
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.3e-79 299.3 396 43.2
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.4e-77 294.3 397 43.3
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.5e-76 290.8 394 42.4
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.0e-75 288.1 307 48.9
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.5e-75 285.0 255 56.1
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.5e-74 282.3 231 58.4
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.6e-73 280.8 228 58.8
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-68 264.6 397 41.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.3e-67 261.2 379 39.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.2e-60 238.0 280 45.7
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-56 223.8 280 45.7
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 9.1e-53 211.8 240 47.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.1e-53 211.8 287 42.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.5e-52 209.5 179 60.9
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.5e-50 204.5 237 45.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 7.5e-47 192.2 181 57.5
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 3.8e-43 179.9 161 56.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 5.7e-39 166.0 222 43.2
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-37 161.4 257 36.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.0e-32 143.7 146 47.9
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.3e-26 123.6 251 34.7
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.6e-25 120.2 82 61.0
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.0e-24 118.6 359 31.2
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 6.8e-24 115.9 208 37.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.9e-22 109.8 196 32.7
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.4e-21 108.2 204 32.4
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 4.3e-18 96.7 182 32.4
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.2e-17 95.1 112 46.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.1e-17 94.4 134 43.3
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.1e-17 92.4 60 63.3
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.1e-17 92.4 60 63.3
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.0e-16 90.1 60 61.7
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.8e-15 86.3 227 30.8
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 3.7e-14 83.6 49 85.7
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 5.4e-13 79.7 194 30.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.8e-08 64.7 119 37.0
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.5e-07 61.6 38 71.1
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 3.4e-07 60.5 171 32.2
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.3e-06 58.5 82 40.2


User provided reference genes

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