Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 0.0e+00 2868.6 1486 100.0
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 0.0e+00 1397.9 1455 53.1
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1086.2 1460 42.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.0e-311 1072.8 1536 41.9
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.1e-308 1063.9 1241 47.1
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 2.7e-307 1059.3 1500 41.3
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 3.9e-306 1055.4 1456 42.3
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 6.8e-298 1028.1 1464 41.1
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 3.4e-297 1025.8 1463 41.1
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 5.7e-297 1025.0 1176 47.8
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 2.8e-296 1022.7 1451 40.9
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 1.2e-291 1007.3 1485 40.7
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 2.7e-291 1006.1 1443 40.7
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 4.0e-290 1002.3 1496 39.6
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 1.8e-287 993.4 1507 39.7
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 5.4e-287 991.9 1448 40.4
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 2.7e-286 989.6 1461 40.2
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 5.9e-286 988.4 1462 39.9
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 1.3e-285 987.3 1486 40.2
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 1.3e-285 987.3 1448 40.6
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 3.8e-285 985.7 1452 40.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 1.9e-284 983.4 1488 39.7
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 1.6e-283 980.3 1443 40.6
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 1.7e-280 970.3 1447 39.9
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 6.3e-280 968.4 1486 39.3
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 3.2e-279 966.1 1478 39.5
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 4.1e-279 965.7 1450 39.7
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.2e-278 964.1 1462 39.4
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 1.3e-277 960.7 1385 40.1
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 9.5e-276 954.5 1451 39.4
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 2.8e-275 953.0 1483 38.8
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 1.5e-273 947.2 1459 39.1
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 9.2e-271 937.9 1456 39.2
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 2.8e-267 926.4 1448 38.3
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 2.3e-266 923.3 1469 38.3
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 1.2e-265 921.0 1442 38.9
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 2.1e-262 910.2 1451 38.0
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 3.5e-262 909.4 1457 39.1
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 1.3e-261 907.5 1419 39.0
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 5.1e-261 905.6 1492 38.5
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 1.9e-260 903.7 1450 38.3
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 4.3e-260 902.5 1481 38.8
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 6.8e-258 895.2 1454 38.7
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 3.4e-257 892.9 1450 38.3
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 4.4e-257 892.5 1460 38.2
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 2.9e-256 889.8 1460 38.2
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 7.1e-255 885.2 1450 38.0
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 4.6e-254 882.5 1479 37.5
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 1.3e-253 880.9 1342 38.7
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 5.1e-253 879.0 1464 37.8
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 2.5e-252 876.7 1492 37.8
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 3.6e-243 846.3 1543 36.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 3.1e-242 843.2 1489 36.9
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 4.0e-242 842.8 1547 36.6
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 1.6e-238 830.9 1562 36.3
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 4.3e-236 822.8 1218 39.2
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 2.5e-223 780.4 1419 36.2
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.8e-213 747.7 1348 35.8
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.8e-210 737.6 1304 36.3
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 5.5e-191 672.9 1506 32.5
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.4e-189 668.3 996 40.4
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 6.7e-189 666.0 1091 39.3
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 7.0e-186 656.0 1067 39.5
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 7.5e-172 609.4 763 45.1
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 8.0e-158 562.8 990 35.4
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.0e-156 558.1 923 38.2
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 4.1e-154 550.4 989 34.7
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 4.4e-148 530.4 689 42.8
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 8.1e-126 456.4 536 45.9
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 7.9e-113 413.3 533 43.5
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.4e-106 392.5 734 34.3
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 5.7e-95 354.0 628 35.7
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.9e-92 344.0 403 44.9
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-64 251.5 234 50.9
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 4.5e-52 211.5 720 28.6
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.3e-48 199.1 225 50.7
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.2e-44 186.8 189 50.8
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 1.2e-41 176.8 263 37.6
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.8e-39 167.9 178 48.9
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 3.1e-32 145.6 117 58.1
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.6e-27 127.9 320 30.0
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 6.6e-27 127.9 157 46.5
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.0e-23 116.3 158 39.2
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 5.8e-23 114.8 115 50.4
CBR_g54163 Chara braunii HOM05D007170 ORTHO05D009243 9.9e-23 114.0 208 36.1
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 1.9e-18 99.8 117 41.9
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 2.1e-17 96.3 262 30.5
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 3.4e-15 89.0 88 53.4
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 3.4e-15 89.0 96 51.0
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 8.4e-14 84.3 116 39.7
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 4.2e-13 82.0 116 38.8
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 4.2e-13 82.0 116 38.8
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 9.3e-13 80.9 213 22.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 6.6e-11 74.7 143 32.2
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.0e-08 65.5 52 59.6
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 3.4e-07 62.4 546 20.3
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 3.4e-07 62.4 70 45.7
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 2.2e-06 59.7 442 20.4
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 2.2e-06 59.7 442 20.4


User provided reference genes

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