Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 1.4e-90 336.3 170 100.0
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 5.2e-85 317.8 168 94.0
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 2.9e-80 302.0 170 88.2
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 5.0e-80 301.2 168 88.7
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 8.5e-80 300.4 168 88.7
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 8.5e-80 300.4 169 89.9
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 1.1e-79 300.1 168 88.1
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 1.1e-79 300.1 168 88.1
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 3.2e-79 298.5 168 88.1
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 3.2e-79 298.5 168 88.1
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 5.5e-79 297.7 168 87.5
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 5.5e-79 297.7 168 86.9
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 7.2e-79 297.4 167 88.6
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 7.2e-79 297.4 168 88.1
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 7.2e-79 297.4 168 88.1
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 7.2e-79 297.4 168 88.1
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 7.2e-79 297.4 168 88.1
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 7.2e-79 297.4 168 88.1
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 9.4e-79 297.0 168 87.5
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 9.4e-79 297.0 170 87.1
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 9.4e-79 297.0 168 88.1
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 9.4e-79 297.0 168 87.5
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.2e-78 296.6 168 88.1
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 1.6e-78 296.2 168 87.5
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 2.1e-78 295.8 168 86.3
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 2.1e-78 295.8 168 86.9
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 3.6e-78 295.0 168 86.9
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 3.6e-78 295.0 168 87.5
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 3.6e-78 295.0 168 86.3
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 6.1e-78 294.3 168 86.9
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 6.1e-78 294.3 168 87.5
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 6.1e-78 294.3 168 87.5
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 8.0e-78 293.9 168 86.9
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 8.0e-78 293.9 168 86.9
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 8.0e-78 293.9 168 86.9
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 1.0e-77 293.5 168 86.3
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 1.4e-77 293.1 168 86.9
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 1.4e-77 293.1 167 86.8
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 1.4e-77 293.1 167 86.8
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.8e-77 292.7 168 86.3
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.8e-77 292.7 168 86.3
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 2.3e-77 292.4 165 88.5
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 3.0e-77 292.0 181 81.8
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 3.0e-77 292.0 168 86.9
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 3.0e-77 292.0 168 86.3
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 3.0e-77 292.0 168 85.7
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 4.0e-77 291.6 168 86.3
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 5.2e-77 291.2 168 85.7
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 5.2e-77 291.2 168 85.7
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 5.2e-77 291.2 174 85.1
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 5.2e-77 291.2 168 85.7
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 5.2e-77 291.2 168 85.7
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.7e-77 290.8 168 85.7
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 8.8e-77 290.4 167 86.2
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 1.1e-76 290.0 181 81.2
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 2.0e-76 289.3 168 85.1
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 2.6e-76 288.9 164 87.2
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 2.6e-76 288.9 164 87.8
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 4.4e-76 288.1 168 85.7
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 4.4e-76 288.1 168 85.1
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 7.5e-76 287.3 187 79.1
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 1.7e-75 286.2 168 83.9
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 2.2e-75 285.8 168 83.9
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 2.2e-75 285.8 168 83.9
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 2.2e-75 285.8 168 83.9
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 2.8e-75 285.4 166 84.9
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 2.8e-75 285.4 168 83.9
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 8.2e-75 283.9 165 84.8
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 8.2e-75 283.9 168 85.7
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 2.4e-74 282.3 167 85.0
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 4.1e-74 281.6 188 78.7
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 2.0e-73 279.3 167 83.8
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 2.0e-73 279.3 167 84.4
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 1.0e-72 276.9 167 80.8
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 1.3e-72 276.6 157 87.3
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 2.9e-72 275.4 157 86.6
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 3.6e-70 268.5 162 84.6
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 8.0e-70 267.3 169 76.3
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.0e-69 266.9 173 80.3
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 3.0e-69 265.4 149 87.9
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 2.0e-68 262.7 149 85.9
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 3.7e-67 258.5 153 84.3
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 4.8e-67 258.1 147 87.1
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 1.1e-66 256.9 150 84.0
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 3.1e-66 255.4 145 87.6
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 1.0e-64 250.4 140 87.1
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 1.5e-63 246.5 139 87.1
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.9e-63 246.1 140 86.4
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 1.6e-62 243.0 144 83.3
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 1.4e-61 240.0 144 81.9
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 2.0e-60 236.1 168 73.8
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 3.4e-60 235.3 260 53.8
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 4.9e-59 231.5 161 75.2
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 1.4e-58 229.9 170 72.9
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 1.4e-58 229.9 168 73.8
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 5.4e-58 228.0 167 73.1
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 2.7e-57 225.7 128 86.7
PGSC0003DMG402004570 Solanum tuberosum HOM05D006777 ORTHO05D008360 1.9e-55 219.5 129 84.5
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 4.0e-53 211.8 169 59.8
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 5.2e-53 211.5 231 53.2
Lj6A528G35 Lonicera japonica HOM05D006777 ORTHO05D008360 1.2e-52 210.3 123 85.4
SHI07424 Sapria himalayana HOM05D006777 ORTHO05D008360 4.4e-52 208.4 128 80.5
CSS0009293 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 9.8e-52 207.2 118 87.3
CSS0028561 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 9.8e-52 207.2 118 87.3
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 1.1e-47 193.7 109 89.0
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 2.8e-46 189.1 110 85.5
Haze_11625 Corylus avellana HOM05D006777 ORTHO05D008360 5.2e-45 184.9 183 59.6
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 2.2e-43 179.5 176 54.0
QL06p026356 Quercus lobata HOM05D000003 ORTHO05D008360 6.0e-41 171.4 114 77.2
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 3.1e-37 159.1 168 56.0
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 7.3e-31 137.9 76 88.2
ECA248G0011 Erigeron canadensis HOM05D006777 ORTHO05D008360 1.4e-29 133.7 73 87.7
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 1.5e-28 130.2 117 59.0
CAN.G767.6 Capsicum annuum HOM05D006777 ORTHO05D008360 2.6e-28 129.4 73 84.9
Lj3P402T13 Lonicera japonica HOM05D006777 ORTHO05D008360 1.1e-23 114.0 75 74.7
Cc00_g31310 Coffea canephora HOM05D006777 ORTHO05D008360 1.6e-22 110.2 90 63.3
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 2.4e-21 106.3 60 83.3
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 3.9e-16 89.0 50 84.0
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 5.8e-12 75.1 38 86.8
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 1.6e-09 67.0 39 79.5
Lj3A409T19 Lonicera japonica HOM05D006777 ORTHO05D008360 3.3e-07 59.3 47 72.3


User provided reference genes

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