Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 2.1e-139 499.2 291 100.0
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 1.1e-37 161.4 298 38.9
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 2.9e-27 126.7 191 47.6
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.4e-26 123.6 197 43.7
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 5.4e-26 122.5 216 40.3
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 7.8e-25 118.6 188 43.6
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.0e-24 118.2 301 35.9
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.7e-24 117.5 217 42.4
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 1.7e-24 117.5 190 42.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.5e-23 114.4 202 40.1
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 1.9e-23 114.0 221 39.4
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 2.5e-23 113.6 227 39.6
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 4.3e-23 112.8 228 39.5
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 4.3e-23 112.8 221 38.9
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 7.3e-23 112.1 182 41.8
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 9.6e-23 111.7 197 42.1
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.3e-22 111.3 186 43.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.6e-22 110.9 223 38.1
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 1.6e-22 110.9 188 39.9
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.8e-22 110.2 186 43.0
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 8.1e-22 108.6 189 39.7
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 1.4e-21 107.8 181 40.9
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.4e-21 107.8 183 42.1
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.8e-21 107.5 186 38.2
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.8e-21 107.5 215 35.8
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.8e-21 107.5 184 40.2
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 2.4e-21 107.1 218 37.6
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 2.4e-21 107.1 216 39.8
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.1e-21 106.7 185 41.1
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 3.1e-21 106.7 214 37.9
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 4.0e-21 106.3 221 38.0
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 6.9e-21 105.5 224 38.8
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 6.9e-21 105.5 184 41.3
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 9.0e-21 105.1 194 40.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 1.2e-20 104.8 230 37.4
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.2e-20 104.8 230 37.0
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.2e-20 104.8 211 38.9
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 1.5e-20 104.4 231 35.5
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.5e-20 104.4 222 37.4
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 2.0e-20 104.0 202 37.6
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 3.4e-20 103.2 228 35.5
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 4.5e-20 102.8 187 40.6
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 5.8e-20 102.4 232 38.8
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 7.6e-20 102.1 231 35.9
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 7.6e-20 102.1 181 40.3
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 7.6e-20 102.1 226 38.1
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 9.9e-20 101.7 215 35.8
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 9.9e-20 101.7 218 35.3
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.3e-19 101.3 230 36.5
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.3e-19 101.3 220 37.3
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.3e-19 101.3 230 36.5
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.3e-19 101.3 220 37.3
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.3e-19 101.3 182 41.8
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.3e-19 101.3 196 38.8
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.3e-19 101.3 221 36.2
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 1.3e-19 101.3 217 38.2
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.3e-19 101.3 226 36.7
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 2.2e-19 100.5 226 37.2
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 2.9e-19 100.1 230 36.5
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 2.9e-19 100.1 192 40.1
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 3.8e-19 99.8 229 35.8
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 4.9e-19 99.4 198 40.4
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 4.9e-19 99.4 220 37.3
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 6.4e-19 99.0 228 36.8
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.1e-18 98.2 230 36.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.4e-18 97.8 188 38.8
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 1.4e-18 97.8 182 38.5
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 1.9e-18 97.4 187 40.1
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 1.9e-18 97.4 231 35.5
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 1.9e-18 97.4 225 36.9
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.9e-18 97.4 216 35.6
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 2.4e-18 97.1 224 37.5
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.2e-18 96.7 219 35.6
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.2e-18 96.7 182 39.6
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.2e-18 96.3 190 38.9
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 4.2e-18 96.3 218 37.2
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 5.4e-18 95.9 226 35.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 9.3e-18 95.1 199 38.7
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 9.3e-18 95.1 199 38.7
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.2e-17 94.7 237 32.9
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.2e-17 94.7 194 40.7
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.2e-17 94.7 171 40.9
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.6e-17 94.4 200 39.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 1.6e-17 94.4 200 39.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 1.6e-17 94.4 200 39.0
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.7e-17 93.6 193 39.9
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 6.0e-17 92.4 237 35.0
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 6.0e-17 92.4 230 37.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 7.9e-17 92.0 219 35.6
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 3.9e-16 89.7 190 39.5
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.9e-16 89.7 178 36.5
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 6.7e-16 89.0 223 35.9
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 6.7e-16 89.0 108 48.1
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.3e-15 86.7 195 33.3
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.3e-15 86.3 230 35.2
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.3e-15 86.3 230 35.2
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.3e-15 86.3 182 36.8
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 5.6e-15 85.9 208 34.1
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.3e-14 84.7 223 34.1
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.1e-14 84.0 182 37.4
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 2.8e-14 83.6 57 73.7
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 3.7e-14 83.2 216 34.7
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.8e-14 82.8 57 71.9
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 4.0e-13 79.7 54 72.2
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.0e-11 75.1 220 31.8
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.8e-11 73.2 50 70.0
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 8.4e-11 72.0 217 32.3
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 1.8e-08 64.3 68 51.5
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.9e-07 60.8 183 33.9
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 3.3e-07 60.1 212 28.8


User provided reference genes

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