Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.4e-300 1034.2 529 100.0
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.0e-103 380.6 288 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.6e-95 353.6 284 59.9
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.2e-94 350.5 373 50.7
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 5.5e-93 345.9 408 47.8
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 5.0e-86 322.8 330 50.3
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.0e-86 322.8 290 54.8
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.5e-86 322.0 307 52.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.1e-85 321.6 287 54.7
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 3.2e-85 320.1 278 55.8
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.4e-85 318.5 307 52.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 9.4e-85 318.5 278 56.5
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.7e-84 317.0 290 54.1
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.7e-84 317.0 287 55.1
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 4.7e-84 316.2 278 54.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.7e-84 316.2 282 54.6
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 8.0e-84 315.5 273 57.1
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.2e-83 312.8 285 55.1
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.8e-83 312.0 282 56.0
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.1e-82 311.6 279 55.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.1e-82 311.6 282 56.0
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.1e-82 311.6 273 57.1
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.5e-82 311.2 326 48.8
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.5e-82 311.2 282 55.0
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.5e-82 311.2 278 54.7
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.5e-82 311.2 273 55.7
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 3.3e-82 310.1 335 50.1
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.3e-82 310.1 277 56.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 4.4e-82 309.7 300 53.3
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 4.4e-82 309.7 296 53.4
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 5.7e-82 309.3 278 54.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 7.4e-82 308.9 289 56.1
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.4e-82 308.9 291 53.3
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.7e-81 307.8 281 54.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.7e-81 307.8 278 54.3
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.2e-81 307.4 292 54.5
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.2e-81 307.4 279 55.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.8e-81 307.0 283 53.7
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.8e-81 307.0 279 56.3
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.8e-81 307.0 273 56.8
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.8e-81 307.0 290 54.1
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 6.3e-81 305.8 281 54.4
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 6.3e-81 305.8 285 53.0
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 6.3e-81 305.8 290 52.4
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 8.2e-81 305.4 272 56.2
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 8.2e-81 305.4 278 55.4
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.8e-80 304.3 278 53.6
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 2.4e-80 303.9 278 56.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.4e-80 303.9 286 54.5
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 4.1e-80 303.1 280 53.9
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 4.1e-80 303.1 272 55.9
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 4.1e-80 303.1 279 54.8
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 4.1e-80 303.1 281 54.8
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.3e-80 302.8 281 52.7
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.3e-80 302.8 281 52.7
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 5.3e-80 302.8 273 54.6
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 7.0e-80 302.4 277 54.2
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.2e-79 301.6 281 53.7
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.2e-79 301.6 280 55.0
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.2e-79 301.6 281 53.4
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.6e-79 301.2 288 51.4
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 2.6e-79 300.4 284 53.9
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.6e-79 300.4 273 54.2
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.5e-79 300.1 281 52.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.5e-79 299.7 281 53.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.5e-79 299.7 281 53.4
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 4.5e-79 299.7 280 55.4
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 5.9e-79 299.3 281 53.4
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 5.9e-79 299.3 281 53.4
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 5.9e-79 299.3 281 53.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.0e-78 298.5 281 53.0
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.0e-78 298.5 286 52.4
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.3e-78 298.1 274 53.6
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.7e-78 297.7 277 53.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.8e-78 296.6 271 54.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 5.0e-78 296.2 290 50.7
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.1e-77 295.0 281 53.4
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.1e-77 295.0 273 54.2
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.5e-77 294.7 269 55.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.9e-77 294.3 280 52.1
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.2e-77 293.5 277 53.8
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 7.2e-77 292.4 291 51.2
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.4e-75 288.1 262 53.8
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 8.8e-75 285.4 273 53.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 8.8e-75 285.4 264 53.8
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.2e-74 285.0 295 51.2
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.7e-74 282.0 259 53.7
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.3e-73 281.6 283 52.3
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.7e-73 280.0 275 52.7
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.1e-72 276.9 293 48.1
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 6.5e-70 269.2 307 47.2
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.5e-69 268.1 272 51.8
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 2.1e-68 264.2 310 47.4
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 2.1e-68 264.2 225 55.1
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.2e-66 258.5 280 49.6
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.3e-65 255.0 308 48.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 5.0e-62 243.0 327 43.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 5.0e-62 243.0 287 46.3
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.5e-61 240.7 183 59.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 7.2e-61 239.2 223 52.0
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 4.0e-59 233.4 179 57.5
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.2e-57 227.6 281 44.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 9.5e-53 212.2 220 49.1
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.8e-44 184.1 127 60.6
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 3.1e-43 180.6 270 40.7
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.3e-41 175.3 152 55.9
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.1e-40 172.2 255 36.1
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.9e-38 163.7 281 39.5
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.5e-37 161.0 374 32.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.0e-30 137.5 227 34.4
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.9e-29 134.8 140 51.4
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 9.5e-29 132.5 110 54.5
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.8e-28 131.0 113 54.0
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 6.2e-28 129.8 119 52.9
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.1e-27 129.0 137 52.6
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.3e-21 107.5 119 46.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.5e-18 98.6 56 66.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.4e-18 97.4 241 32.8
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.9e-16 91.7 328 25.0
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.2e-16 90.9 122 45.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 7.8e-15 86.3 62 58.1
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 4.8e-12 77.0 126 38.9
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.3e-11 73.6 112 42.0
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.8e-10 70.1 57 56.1
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 8.4e-09 66.2 53 56.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.4e-08 65.5 199 27.1
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.9e-08 65.1 109 39.4
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 3.2e-08 64.3 90 46.7
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 3.2e-08 64.3 76 46.1
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 5.4e-08 63.5 93 44.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.5e-07 60.8 101 40.6
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 7.9e-07 59.7 52 53.8


User provided reference genes

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