Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 7.1e-24 113.2 63 100.0
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 3.2e-08 61.2 63 52.4
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 5.5e-08 60.5 63 52.4
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 7.2e-08 60.1 63 50.8
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 7.2e-08 60.1 63 55.6
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 9.4e-08 59.7 58 58.6
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.6e-07 58.9 63 49.2
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 2.1e-07 58.5 59 57.6
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 2.1e-07 58.5 54 57.4
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.1e-07 58.5 56 51.8
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 2.7e-07 58.2 63 49.2
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 3.6e-07 57.8 63 47.6
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 3.6e-07 57.8 58 55.2
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 4.6e-07 57.4 51 60.8
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 4.6e-07 57.4 59 49.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 4.6e-07 57.4 59 49.2
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 6.1e-07 57.0 63 47.6
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 6.1e-07 57.0 59 49.2
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 6.1e-07 57.0 59 49.2
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 6.1e-07 57.0 58 53.4
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 6.1e-07 57.0 63 52.4
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.1e-07 57.0 63 52.4
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 6.1e-07 57.0 59 49.2
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 7.9e-07 56.6 63 50.8
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 7.9e-07 56.6 59 52.5
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.0e-06 56.2 59 49.2
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.0e-06 56.2 59 49.2
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.0e-06 56.2 59 52.5
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.0e-06 56.2 58 51.7
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.0e-06 56.2 61 49.2
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.0e-06 56.2 59 50.8
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.4e-06 55.8 59 50.8
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 1.4e-06 55.8 59 52.5
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.4e-06 55.8 63 49.2
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.4e-06 55.8 59 52.5
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.4e-06 55.8 62 50.0
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.8e-06 55.5 59 52.5
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.8e-06 55.5 59 52.5
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.8e-06 55.5 62 48.4
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.8e-06 55.5 59 52.5
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.8e-06 55.5 58 55.2
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.8e-06 55.5 63 49.2
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 2.3e-06 55.1 59 47.5
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.3e-06 55.1 63 49.2
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.3e-06 55.1 63 50.8
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.3e-06 55.1 62 48.4
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.0e-06 54.7 63 47.6
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 3.0e-06 54.7 63 47.6
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 3.0e-06 54.7 60 48.3
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 3.9e-06 54.3 58 50.0
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.9e-06 54.3 62 48.4
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.1e-06 53.9 59 49.2
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.1e-06 53.9 59 49.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 5.1e-06 53.9 63 46.0
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 5.1e-06 53.9 58 51.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 5.1e-06 53.9 59 50.8
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 6.7e-06 53.5 62 45.2
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 6.7e-06 53.5 59 50.8
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 6.7e-06 53.5 62 46.8
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 6.7e-06 53.5 59 49.2
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 8.8e-06 53.1 56 51.8


User provided reference genes

Program Settings