Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_18330 Physcomitrium patens HOM05D035338 ORTHO05D003881 7.3e-50 200.3 104 100.0
Pp3c24_1490 Physcomitrium patens HOM05D003410 ORTHO05D003881 7.4e-18 94.0 96 46.9
Pp3c12_19810 Physcomitrium patens HOM05D035338 ORTHO05D308920 4.8e-17 91.3 105 51.4
Pp3c4_10120 Physcomitrium patens HOM05D035338 ORTHO05D313138 1.7e-14 82.8 105 46.7
Thhalv10003294m.g Eutrema salsugineum HOM05D003410 ORTHO05D003881 1.4e-11 73.2 69 47.8
BcaB07g30984 Brassica carinata HOM05D003410 ORTHO05D003881 3.0e-11 72.0 97 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1763 Anthoceros agrestis HOM05D003410 ORTHO05D003881 3.9e-11 71.6 70 48.6
Mapoly0045s0003 Marchantia polymorpha HOM05D003410 ORTHO05D003881 3.9e-11 71.6 61 50.8
Carub.0008s0458 Capsella rubella HOM05D003410 ORTHO05D003881 6.7e-11 70.9 69 46.4
Sabra14G0143300 Salix brachista HOM05D003410 ORTHO05D003881 8.8e-11 70.5 72 50.0
Aa31LG5G3300 Aethionema arabicum HOM05D003410 ORTHO05D003881 1.1e-10 70.1 69 47.8
BcaB07g30549 Brassica carinata HOM05D003410 ORTHO05D003881 1.1e-10 70.1 69 46.4
A06p47590 Brassica napus HOM05D003410 ORTHO05D003881 1.1e-10 70.1 62 50.0
A09p20730 Brassica napus HOM05D003410 ORTHO05D003881 1.1e-10 70.1 69 49.3
BraA06t27627Z Brassica rapa HOM05D003410 ORTHO05D003881 1.1e-10 70.1 62 50.0
BraA09t37677Z Brassica rapa HOM05D003410 ORTHO05D003881 1.1e-10 70.1 69 49.3
Sp2g08800 Schrenkiella parvula HOM05D003410 ORTHO05D003881 1.1e-10 70.1 69 46.4
BcaC04g21879 Brassica carinata HOM05D003410 ORTHO05D003881 2.5e-10 68.9 97 38.1
C09p26240 Brassica napus HOM05D003410 ORTHO05D003881 2.5e-10 68.9 97 38.1
BolC9t55525H Brassica oleracea HOM05D003410 ORTHO05D003881 2.5e-10 68.9 97 38.1
BcaC03g16619 Brassica carinata HOM05D003410 ORTHO05D003881 3.3e-10 68.6 69 44.9
C02p44520 Brassica napus HOM05D003410 ORTHO05D003881 3.3e-10 68.6 69 44.9
Potri.014G192601 Populus trichocarpa HOM05D003410 ORTHO05D003881 3.3e-10 68.6 72 48.6
SEGI_13440 Sequoiadendron giganteum HOM05D003410 ORTHO05D003881 3.3e-10 68.6 67 49.3
CARHR179430 Cardamine hirsuta HOM05D003410 ORTHO05D003881 4.3e-10 68.2 69 47.8
Lsat_1_v5_gn_0_8120 Lactuca sativa HOM05D003410 ORTHO05D003881 4.3e-10 68.2 94 42.6
AT5G43970 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 7.4e-10 67.4 69 47.8
HanXRQChr11g0321361 Helianthus annuus HOM05D003410 ORTHO05D003881 9.7e-10 67.0 94 43.6
AL8G16140 Arabidopsis lyrata HOM05D003410 ORTHO05D003881 1.3e-09 66.6 69 47.8
Sed0011790 Sechium edule HOM05D003410 ORTHO05D003881 1.3e-09 66.6 70 45.7
Sc13g0003120 Simmondsia chinensis HOM05D003410 ORTHO05D003881 1.7e-09 66.2 85 42.4
Nitab4.5_0009671g0040 Nicotiana tabacum HOM05D003410 ORTHO05D003881 2.2e-09 65.9 73 39.7
Potri.002G257200 Populus trichocarpa HOM05D003410 ORTHO05D003881 2.2e-09 65.9 72 47.2
Sed0015699 Sechium edule HOM05D003410 ORTHO05D003881 2.2e-09 65.9 70 44.3
Sed0017794 Sechium edule HOM05D003410 ORTHO05D003881 2.2e-09 65.9 67 47.8
CANSAT01G0813 Cannabis sativa HOM05D003410 ORTHO05D003881 2.8e-09 65.5 72 47.2
AUR62037221 Chenopodium quinoa HOM05D003410 ORTHO05D003881 2.8e-09 65.5 68 47.1
SMO358G0128 Selaginella moellendorffii HOM05D003410 ORTHO05D003881 3.7e-09 65.1 85 36.5
BcaC06g34608 Brassica carinata HOM05D003410 ORTHO05D003881 4.8e-09 64.7 62 48.4
BcaC06g34614 Brassica carinata HOM05D003410 ORTHO05D003881 4.8e-09 64.7 62 48.4
C07p26430 Brassica napus HOM05D003410 ORTHO05D003881 4.8e-09 64.7 62 48.4
C07p26530 Brassica napus HOM05D003410 ORTHO05D003881 4.8e-09 64.7 62 48.4
BolC7t43173H Brassica oleracea HOM05D003410 ORTHO05D003881 4.8e-09 64.7 62 48.4
CSS0004045 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 4.8e-09 64.7 66 47.0
CiPaw.03G270300 Carya illinoinensis HOM05D003410 ORTHO05D003881 4.8e-09 64.7 75 44.0
Lj6E621T0 Lonicera japonica HOM05D003410 ORTHO05D003881 4.8e-09 64.7 70 42.9
Nn1g02957 Nelumbo nucifera HOM05D003410 ORTHO05D003881 4.8e-09 64.7 91 40.7
BolC7t43180H Brassica oleracea HOM05D003410 ORTHO05D003881 6.3e-09 64.3 62 48.4
Lsat_1_v5_gn_2_104281 Lactuca sativa HOM05D003410 ORTHO05D003881 6.3e-09 64.3 69 46.4
MELO3C023044.2 Cucumis melo HOM05D003410 ORTHO05D003881 8.2e-09 63.9 71 46.5
CsaV3_2G012420 Cucumis sativus L. HOM05D003410 ORTHO05D003881 8.2e-09 63.9 71 46.5
Migut.N00301 Erythranthe guttata HOM05D003410 ORTHO05D003881 8.2e-09 63.9 69 43.5
HanXRQChr05g0147801 Helianthus annuus HOM05D003410 ORTHO05D003881 8.2e-09 63.9 90 40.0
Lalb_Chr19g0128521 Lupinus albus HOM05D003410 ORTHO05D003881 8.2e-09 63.9 75 40.0
THA.LOC104815972 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 8.2e-09 63.9 62 50.0
Carub.0001s0322 Capsella rubella HOM05D003410 ORTHO05D003881 1.1e-08 63.5 74 41.9
SalBow4G2851 Salvia bowleyana HOM05D003410 ORTHO05D003881 1.1e-08 63.5 62 50.0
Solyc06g008120.1 Solanum lycopersicum HOM05D003410 ORTHO05D003881 1.1e-08 63.5 70 41.4
Sopen06g002930 Solanum pennellii HOM05D003410 ORTHO05D003881 1.1e-08 63.5 70 41.4
HPP92_025323 Vanilla planifolia HOM05D003410 ORTHO05D003881 1.1e-08 63.5 74 47.3
Actinidia39930 Actinidia chinensis HOM05D003410 ORTHO05D003881 1.4e-08 63.2 85 40.0
Ca_11898_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 1.4e-08 63.2 79 38.0
COL.COLO4_10574 Corchorus olitorius HOM05D003410 ORTHO05D003881 1.4e-08 63.2 69 44.9
Nn3g19777 Nelumbo nucifera HOM05D003410 ORTHO05D003881 1.4e-08 63.2 97 40.2
THA.LOC104801123 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 1.4e-08 63.2 62 48.4
Atru.chr5.1834 Acer truncatum HOM05D003410 ORTHO05D003881 1.8e-08 62.8 76 43.4
Glyma.10G040200 Glycine max HOM05D003410 ORTHO05D003881 1.8e-08 62.8 66 43.9
Gohir.A08G192000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.8e-08 62.8 76 44.7
Peaxi162Scf01157g00006 Petunia axillaris HOM05D003410 ORTHO05D003881 1.8e-08 62.8 66 42.4
PGR031G2487 Punica granatum HOM05D003410 ORTHO05D003881 1.8e-08 62.8 62 48.4
AL1G13670 Arabidopsis lyrata HOM05D003410 ORTHO05D003881 2.4e-08 62.4 62 43.5
Gohir.A10G107800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.4e-08 62.4 85 42.4
Gohir.D08G210000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.4e-08 62.4 76 44.7
Gohir.D10G158500 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.4e-08 62.4 90 44.4
Gorai.004G222400 Gossypium raimondii HOM05D003410 ORTHO05D003881 2.4e-08 62.4 76 44.7
Gorai.011G178100 Gossypium raimondii HOM05D003410 ORTHO05D003881 2.4e-08 62.4 90 44.4
QL06p020998 Quercus lobata HOM05D003410 ORTHO05D003881 2.4e-08 62.4 67 46.3
Rhsim02G0043700 Rhododendron simsii HOM05D003410 ORTHO05D003881 2.4e-08 62.4 58 51.7
Thecc.04G263900 Theobroma cacao HOM05D003410 ORTHO05D003881 2.4e-08 62.4 65 46.2
vmacro15478 Vaccinium macrocarpon HOM05D003410 ORTHO05D003881 2.4e-08 62.4 62 48.4
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 3.1e-08 62.0 69 42.0
Duzib138G1667 Durio zibethinus HOM05D003410 ORTHO05D003881 3.1e-08 62.0 73 42.5
Migut.D00472 Erythranthe guttata HOM05D003410 ORTHO05D003881 3.1e-08 62.0 62 48.4
Glyma.13G126900 Glycine max HOM05D003410 ORTHO05D003881 3.1e-08 62.0 66 43.9
Gohir.D07G210200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 3.1e-08 62.0 71 42.3
CSS0029259 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 4.1e-08 61.6 86 39.5
Cpa.g.sc87.22 Carica papaya HOM05D003410 ORTHO05D003881 4.1e-08 61.6 73 42.5
Cfa014780 Carpinus fangiana HOM05D003410 ORTHO05D003881 4.1e-08 61.6 91 39.6
Cfa021012 Carpinus fangiana HOM05D003410 ORTHO05D003881 4.1e-08 61.6 91 39.6
CiPaw.01G178000 Carya illinoinensis HOM05D003410 ORTHO05D003881 4.1e-08 61.6 70 42.9
Duzib133G1351 Durio zibethinus HOM05D003410 ORTHO05D003881 4.1e-08 61.6 76 43.4
Duzib212G0034 Durio zibethinus HOM05D003410 ORTHO05D003881 4.1e-08 61.6 68 44.1
Phvul.007G189500 Phaseolus vulgaris HOM05D003410 ORTHO05D003881 4.1e-08 61.6 66 43.9
Sabra02G0195600 Salix brachista HOM05D003410 ORTHO05D003881 4.1e-08 61.6 62 46.8
TAR362G0673 Trochodendron aralioides HOM05D003410 ORTHO05D003881 4.1e-08 61.6 97 39.2
TAR633G0988 Trochodendron aralioides HOM05D003410 ORTHO05D003881 4.1e-08 61.6 97 38.1
GSVIVG01027914001 Vitis vinifera HOM05D003410 ORTHO05D003881 4.1e-08 61.6 90 37.8
CSS0024044 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 5.3e-08 61.2 89 39.3
DCAR_000567 Daucus carota HOM05D003410 ORTHO05D003881 5.3e-08 61.2 70 44.3
Lalb_Chr03g0036961 Lupinus albus HOM05D003410 ORTHO05D003881 5.3e-08 61.2 72 44.4
Nitab4.5_0000326g0310 Nicotiana tabacum HOM05D003410 ORTHO05D003881 5.3e-08 61.2 62 41.9
TWI53G1829 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 5.3e-08 61.2 66 43.9
CAN.G941.30 Capsicum annuum HOM05D003410 ORTHO05D003881 6.9e-08 60.8 69 42.0
ECA232G0562 Erigeron canadensis HOM05D003410 ORTHO05D003881 6.9e-08 60.8 70 45.7
Gohir.A07G204200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 6.9e-08 60.8 71 42.3
Gorai.001G237600 Gossypium raimondii HOM05D003410 ORTHO05D003881 6.9e-08 60.8 71 42.3
Lalb_Chr21g0314111 Lupinus albus HOM05D003410 ORTHO05D003881 6.9e-08 60.8 72 38.9
MBI10_g35429_MAGBIO Magnolia biondii HOM05D003410 ORTHO05D003881 6.9e-08 60.8 70 42.9
Manes.12G036200 Manihot esculenta HOM05D003410 ORTHO05D003881 6.9e-08 60.8 76 43.4
CANSAT78G1185 Cannabis sativa HOM05D003410 ORTHO05D003881 9.1e-08 60.5 65 41.5
CARHR003410 Cardamine hirsuta HOM05D003410 ORTHO05D003881 9.1e-08 60.5 67 43.3
Medtr1g045505 Medicago truncatula HOM05D003410 ORTHO05D003881 9.1e-08 60.5 66 39.4
TAR365G0976 Trochodendron aralioides HOM05D003410 ORTHO05D003881 9.1e-08 60.5 93 38.7
Cfa002479 Carpinus fangiana HOM05D003410 ORTHO05D003881 1.2e-07 60.1 67 46.3
Haze_24698 Corylus avellana HOM05D003410 ORTHO05D003881 1.2e-07 60.1 67 46.3
Gohir.A07G151800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.2e-07 60.1 76 43.4
Gohir.D07G158100 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.2e-07 60.1 76 43.4
Lj6g0010954 Lotus japonicus HOM05D003410 ORTHO05D003881 1.2e-07 60.1 78 41.0
TWI73G1070 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 1.2e-07 60.1 93 37.6
Actinidia09517 Actinidia chinensis HOM05D003410 ORTHO05D003881 1.5e-07 59.7 66 42.4
Aa31LG1G20770 Aethionema arabicum HOM05D003410 ORTHO05D003881 1.5e-07 59.7 62 38.7
AUR62018067 Chenopodium quinoa HOM05D003410 ORTHO05D003881 1.5e-07 59.7 90 37.8
Gorai.001G181300 Gossypium raimondii HOM05D003410 ORTHO05D003881 1.5e-07 59.7 76 43.4
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 1.5e-07 59.7 60 45.0
Thecc.01G251100 Theobroma cacao HOM05D003410 ORTHO05D003881 1.5e-07 59.7 62 45.2
TAR636G2865 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.5e-07 59.7 78 42.3
Atru.chr4.1916 Acer truncatum HOM05D003410 ORTHO05D003881 2.0e-07 59.3 62 43.5
AT1G04070 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 2.0e-07 59.3 67 38.8
BolC5t29012H Brassica oleracea HOM05D003410 ORTHO05D003881 2.0e-07 59.3 64 42.2
AUR62015270 Chenopodium quinoa HOM05D003410 ORTHO05D003881 2.0e-07 59.3 66 42.4
Ca_09650_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 2.0e-07 59.3 81 40.7
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 2.0e-07 59.3 62 43.5
Oeu011221.1 Olea europaea HOM05D003410 ORTHO05D003881 2.0e-07 59.3 73 39.7
Sed0016490 Sechium edule HOM05D003410 ORTHO05D003881 2.0e-07 59.3 63 46.0
Dinv29803 Davidia involucrata HOM05D000001 ORTHO05D011120 2.6e-07 58.9 62 40.3
Lj5g0002672 Lotus japonicus HOM05D003410 ORTHO05D003881 3.4e-07 58.5 74 44.6
Os02g0496900 Oryza sativa ssp. japonica HOM05D003410 ORTHO05D003881 3.4e-07 58.5 83 43.4
GSVIVG01028415001 Vitis vinifera HOM05D003410 ORTHO05D003881 3.4e-07 58.5 60 45.0
A10p02530 Brassica napus HOM05D003410 ORTHO05D003881 4.5e-07 58.2 64 42.2
Ciclev10006291m.g Citrus clementina HOM05D003410 ORTHO05D003881 4.5e-07 58.2 58 48.3
Eucgr.K01430 Eucalyptus grandis HOM05D003410 ORTHO05D003881 4.5e-07 58.2 62 43.5
PGSC0003DMG400013457 Solanum tuberosum HOM05D003410 ORTHO05D003881 4.5e-07 58.2 97 37.1
BraA10t42522Z Brassica rapa HOM05D003410 ORTHO05D003881 5.9e-07 57.8 64 42.2
Manes.15G045700 Manihot esculenta HOM05D003410 ORTHO05D003881 5.9e-07 57.8 71 42.3
BcaC05g24474 Brassica carinata HOM05D003410 ORTHO05D003881 7.7e-07 57.4 64 42.2
FvH4_2g20580 Fragaria vesca HOM05D003410 ORTHO05D003881 7.7e-07 57.4 62 38.7
FAN15G2918 Fragaria x ananassa HOM05D003410 ORTHO05D003881 7.7e-07 57.4 62 38.7
FAN24G0274 Fragaria x ananassa HOM05D003410 ORTHO05D003881 7.7e-07 57.4 62 38.7
FAN27G2598 Fragaria x ananassa HOM05D003410 ORTHO05D003881 7.7e-07 57.4 62 38.7
MD13G1221200 Malus domestica HOM05D003410 ORTHO05D003881 7.7e-07 57.4 66 39.4
Prupe.8G216100 Prunus persica HOM05D003410 ORTHO05D003881 7.7e-07 57.4 66 37.9
Rhsim01G0260900 Rhododendron simsii HOM05D000074 ORTHO05D011471 7.7e-07 57.4 60 45.0
Rhsim04G0172400 Rhododendron simsii HOM05D003410 ORTHO05D003881 7.7e-07 57.4 67 40.3
Solyc03g005700.1 Solanum lycopersicum HOM05D003410 ORTHO05D003881 7.7e-07 57.4 71 42.3
Sopen03g001710 Solanum pennellii HOM05D003410 ORTHO05D003881 7.7e-07 57.4 71 42.3
EL10Ac3g06578 Beta vulgaris HOM05D003410 ORTHO05D003881 1.0e-06 57.0 67 40.3
CAN.G638.38 Capsicum annuum HOM05D003410 ORTHO05D003881 1.0e-06 57.0 68 42.6
MD00G1060300 Malus domestica HOM05D003410 ORTHO05D003881 1.0e-06 57.0 85 35.3
Manes.03G159000 Manihot esculenta HOM05D003410 ORTHO05D003881 1.0e-06 57.0 98 36.7
Sp1g02890 Schrenkiella parvula HOM05D003410 ORTHO05D003881 1.0e-06 57.0 66 39.4
Prupe.1G047800 Prunus persica HOM05D003410 ORTHO05D003881 1.3e-06 56.6 67 37.3
SHI01392 Sapria himalayana HOM05D003410 ORTHO05D003881 1.3e-06 56.6 71 39.4
unitig_0.g2245 Utricularia gibba HOM05D003410 ORTHO05D003881 1.3e-06 56.6 99 35.4
unitig_52.g17406 Utricularia gibba HOM05D003410 ORTHO05D003881 1.7e-06 56.2 69 39.1
Medtr1g069560 Medicago truncatula HOM05D003410 ORTHO05D003881 2.2e-06 55.8 58 46.6
RcHm_v2.0_Chr6g0286751 Rosa chinensis HOM05D003410 ORTHO05D003881 2.2e-06 55.8 62 38.7
Duzib151G0669 Durio zibethinus HOM05D003410 ORTHO05D003881 2.9e-06 55.5 58 44.8
Psat6g062760 Pisum sativum HOM05D003410 ORTHO05D003881 2.9e-06 55.5 59 45.8
TPR.G5650 Trifolium pratense HOM05D003410 ORTHO05D003881 2.9e-06 55.5 70 41.4
Thhalv10009189m.g Eutrema salsugineum HOM05D003410 ORTHO05D003881 3.8e-06 55.1 67 40.3
Aqoxy2G00979 Aquilegia oxysepala HOM05D003410 ORTHO05D003881 5.0e-06 54.7 94 31.9
Peaxi162Scf00319g00058 Petunia axillaris HOM05D003410 ORTHO05D003881 5.0e-06 54.7 67 41.8
ECA238G3201 Erigeron canadensis HOM05D003410 ORTHO05D003881 6.5e-06 54.3 60 41.7
PSO013G0207 Papaver somniferum HOM05D003410 ORTHO05D003881 6.5e-06 54.3 91 36.3
PSO832G0849 Papaver somniferum HOM05D003410 ORTHO05D003881 6.5e-06 54.3 91 36.3
SMO145G0028 Selaginella moellendorffii HOM05D003410 ORTHO05D003881 6.5e-06 54.3 74 37.8
CiPaw.02G107100 Carya illinoinensis HOM05D003410 ORTHO05D003881 8.5e-06 53.9 62 40.3
Dinv16396 Davidia involucrata HOM05D003410 ORTHO05D003881 8.5e-06 53.9 48 50.0
TAR633G0085 Trochodendron aralioides HOM05D003410 ORTHO05D003881 8.5e-06 53.9 70 40.0
TAR633G1475 Trochodendron aralioides HOM05D003410 ORTHO05D003881 8.5e-06 53.9 70 40.0


User provided reference genes

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