Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_15950 Physcomitrium patens HOM05D000735 ORTHO05D004669 3.4e-158 561.6 284 100.0
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 2.3e-37 160.2 192 56.2
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.8e-29 134.0 176 48.9
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 4.8e-27 125.9 174 46.6
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.5e-25 120.9 225 40.0
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 3.4e-25 119.8 181 44.2
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 5.9e-25 119.0 168 47.0
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 2.2e-24 117.1 180 43.9
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.9e-24 116.7 172 49.4
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 2.9e-24 116.7 177 46.3
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 3.8e-24 116.3 179 44.7
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 3.8e-24 116.3 194 44.8
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 5.0e-24 115.9 172 48.3
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 6.5e-24 115.5 161 49.7
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 6.5e-24 115.5 167 47.3
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 6.5e-24 115.5 174 46.0
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 6.5e-24 115.5 173 46.2
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 8.5e-24 115.2 179 44.1
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.1e-23 114.8 179 44.1
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 1.1e-23 114.8 179 44.1
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.4e-23 114.4 202 43.6
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 1.9e-23 114.0 189 42.9
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 1.9e-23 114.0 189 42.9
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.9e-23 114.0 173 45.7
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.9e-23 114.0 173 45.7
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.9e-23 114.0 173 45.7
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 2.5e-23 113.6 189 43.4
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 2.5e-23 113.6 173 46.8
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.5e-23 113.6 158 46.8
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 3.2e-23 113.2 189 43.9
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 3.2e-23 113.2 173 46.8
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 3.2e-23 113.2 173 46.8
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 3.2e-23 113.2 175 45.7
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 3.2e-23 113.2 171 47.4
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 4.2e-23 112.8 157 48.4
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 4.2e-23 112.8 197 42.6
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 5.5e-23 112.5 192 43.8
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 5.5e-23 112.5 173 45.7
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 5.5e-23 112.5 180 47.2
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 5.5e-23 112.5 173 46.8
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 7.2e-23 112.1 193 42.5
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 7.2e-23 112.1 183 43.2
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 7.2e-23 112.1 198 42.4
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 7.2e-23 112.1 172 46.5
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 9.4e-23 111.7 173 44.5
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 9.4e-23 111.7 170 47.6
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 9.4e-23 111.7 179 45.8
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.2e-22 111.3 193 44.0
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 1.2e-22 111.3 173 45.7
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 1.6e-22 110.9 190 42.6
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.6e-22 110.9 158 47.5
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 2.1e-22 110.5 201 40.8
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 2.1e-22 110.5 173 45.1
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 2.1e-22 110.5 190 43.7
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 2.7e-22 110.2 158 46.2
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 2.7e-22 110.2 172 44.8
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 2.7e-22 110.2 171 45.0
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 2.7e-22 110.2 157 46.5
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 2.7e-22 110.2 162 45.1
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 3.6e-22 109.8 179 44.7
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 3.6e-22 109.8 172 45.9
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 3.6e-22 109.8 195 42.6
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 4.6e-22 109.4 180 43.9
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 4.6e-22 109.4 188 44.1
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 4.6e-22 109.4 179 44.1
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 4.6e-22 109.4 173 45.1
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 4.6e-22 109.4 173 44.5
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 4.6e-22 109.4 172 46.5
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 4.6e-22 109.4 181 43.6
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 6.1e-22 109.0 202 39.1
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 6.1e-22 109.0 179 45.3
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 6.1e-22 109.0 173 45.1
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 6.1e-22 109.0 173 45.1
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 7.9e-22 108.6 160 47.5
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 7.9e-22 108.6 170 46.5
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 1.0e-21 108.2 173 45.1
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.0e-21 108.2 173 45.1
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 1.0e-21 108.2 197 41.6
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.4e-21 107.8 179 44.1
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.4e-21 107.8 179 44.1
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 1.4e-21 107.8 172 45.3
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.4e-21 107.8 172 45.3
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 1.4e-21 107.8 173 44.5
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 1.8e-21 107.5 173 43.9
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 2.3e-21 107.1 172 44.2
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 2.3e-21 107.1 173 42.8
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 3.0e-21 106.7 173 43.4
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 3.0e-21 106.7 173 44.5
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 5.1e-21 105.9 185 42.7
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 6.7e-21 105.5 165 46.1
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 6.7e-21 105.5 165 46.1
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 8.8e-21 105.1 179 43.6
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 1.1e-20 104.8 173 43.4
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 1.1e-20 104.8 172 43.6
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 2.0e-20 104.0 195 43.1
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 3.3e-20 103.2 217 39.2
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 3.3e-20 103.2 257 35.0
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 4.3e-20 102.8 219 37.9
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 4.3e-20 102.8 186 41.9
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 5.7e-20 102.4 186 43.0
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.7e-19 100.9 210 39.5
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 2.8e-19 100.1 204 40.2
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 4.5e-17 92.8 202 37.6
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 5.9e-17 92.4 133 46.6
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 2.9e-16 90.1 159 40.9
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 1.1e-15 88.2 81 60.5
Lalb_Chr20g0119791 Lupinus albus HOM05D000735 ORTHO05D004669 1.9e-15 87.4 81 59.3
Lalb_Chr18g0057601 Lupinus albus HOM05D000735 ORTHO05D004669 4.2e-15 86.3 86 57.0
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 4.2e-15 86.3 81 60.5
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 1.2e-14 84.7 81 56.8
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 1.6e-14 84.3 247 33.2
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.6e-14 84.3 81 58.0
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 2.1e-14 84.0 96 51.0
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.1e-10 71.6 171 35.1
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 4.1e-10 69.7 160 36.9
SEGI_21103 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 4.1e-10 69.7 51 68.6
Pp3c7_5310 Physcomitrium patens HOM05D000735 ORTHO05D004669 7.0e-10 68.9 174 35.1
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 9.1e-10 68.6 160 37.5
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 4.5e-09 66.2 174 36.2
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 6.5e-08 62.4 171 31.6
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 1.1e-07 61.6 298 23.2
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 1.5e-07 61.2 179 32.4
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 1.9e-07 60.8 206 29.6
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 7.2e-07 58.9 148 33.8
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 1.2e-06 58.2 146 33.6


User provided reference genes

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