Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 7.8e-177 623.6 304 100.0
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 7.9e-60 235.0 302 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.8e-35 154.1 297 34.7
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 3.4e-31 139.8 289 33.2
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.0e-27 126.7 274 30.7
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.9e-27 126.3 294 30.6
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.8e-27 125.2 290 30.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 7.4e-26 122.1 298 30.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.7e-25 120.9 274 29.9
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.2e-25 120.6 282 29.8
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.2e-25 120.6 293 30.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 2.2e-25 120.6 293 29.7
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 8.2e-25 118.6 296 29.7
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.8e-24 117.5 291 29.2
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.8e-24 117.5 297 30.3
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.8e-24 117.5 290 31.4
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.8e-24 117.5 296 31.4
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.4e-24 117.1 272 27.9
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.1e-24 116.7 291 31.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 4.1e-24 116.3 286 30.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 5.3e-24 115.9 295 29.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 6.9e-24 115.5 276 29.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.1e-24 115.2 302 29.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.1e-24 115.2 306 28.4
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.6e-23 113.6 297 28.6
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 3.4e-23 113.2 288 29.9
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.3e-22 111.3 295 30.2
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.9e-22 110.2 277 27.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.8e-22 109.8 273 28.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.8e-22 109.8 290 27.6
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 5.0e-22 109.4 307 29.6
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.0e-22 109.4 240 31.7
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.0e-22 109.4 297 29.3
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 6.5e-22 109.0 277 27.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.1e-21 108.2 292 28.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.1e-21 108.2 240 31.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-21 108.2 240 31.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.1e-21 108.2 292 28.4
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.1e-21 108.2 294 28.2
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-21 107.8 303 28.4
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.4e-21 107.8 297 29.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.4e-21 107.8 275 30.2
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 2.5e-21 107.1 336 26.2
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.5e-21 107.1 300 26.3
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 3.2e-21 106.7 304 27.0
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.2e-21 106.7 275 28.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 3.2e-21 106.7 240 31.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 4.2e-21 106.3 293 28.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.5e-21 105.9 240 32.1
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 5.5e-21 105.9 291 28.2
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.2e-21 105.5 240 30.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.1e-20 104.0 294 28.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.7e-20 103.6 305 28.9
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.7e-20 103.6 239 30.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.6e-20 103.2 292 26.4
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 4.7e-20 102.8 300 26.7
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 6.1e-20 102.4 293 28.0
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.1e-20 102.4 284 29.2
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 6.1e-20 102.4 193 34.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.0e-19 101.7 239 28.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.8e-19 100.9 236 30.1
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.3e-19 100.5 274 28.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.9e-19 99.8 287 27.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 5.1e-19 99.4 302 28.5
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.8e-19 98.6 301 25.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.5e-18 97.8 210 32.4
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.6e-18 97.1 294 27.2
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 5.7e-18 95.9 292 27.7
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.3e-17 94.7 300 26.0
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.7e-17 94.4 272 28.7
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.2e-17 94.0 237 26.6
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.2e-17 94.0 289 27.3
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.1e-16 91.7 166 34.3
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.8e-16 90.9 303 26.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.4e-16 90.5 206 28.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.4e-16 90.5 273 28.6
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.1e-16 89.7 298 26.8
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.2e-15 88.2 223 30.0
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.2e-15 88.2 168 35.1
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.5e-15 86.7 295 24.7
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.5e-15 86.7 296 26.7
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 4.5e-15 86.3 296 26.7
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.3e-14 84.7 167 34.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.2e-14 84.0 294 25.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.2e-14 84.0 298 27.2
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.9e-14 83.6 295 27.5
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.8e-14 83.2 165 30.3
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 6.5e-14 82.4 294 25.9
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 8.5e-14 82.0 298 26.2
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.9e-13 80.9 169 32.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.5e-13 80.5 234 26.1
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 5.5e-13 79.3 238 26.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.6e-12 77.8 158 27.8
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.7e-12 77.0 182 30.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.4e-11 74.7 159 28.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.2e-11 72.8 202 27.7
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.5e-10 71.2 164 30.5
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 5.7e-10 69.3 164 26.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.8e-09 67.0 278 25.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.4e-08 64.7 142 33.8
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.2e-07 61.6 231 26.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.2e-07 61.6 229 25.3
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 4.5e-07 59.7 132 27.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 5.0e-06 56.2 226 26.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 8.5e-06 55.5 230 23.5


User provided reference genes

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