Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-63 245.0 120 100.0
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-50 201.8 148 71.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.5e-42 174.1 148 62.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-38 161.8 148 58.1
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-36 156.8 148 57.4
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-34 150.2 147 54.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.8e-31 137.1 148 50.7
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.3e-28 127.9 134 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-25 119.8 150 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.1e-24 114.4 148 44.6
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.8e-21 105.5 141 44.7
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.1e-20 103.6 148 38.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.7e-19 97.4 148 39.9
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 4.7e-16 88.2 147 36.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.0e-15 87.0 146 36.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-14 82.8 149 34.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.7e-14 81.3 148 33.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.8e-12 76.3 146 32.9
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.1e-12 75.1 145 31.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.1e-12 75.1 143 32.9
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 4.1e-12 75.1 149 32.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 5.4e-12 74.7 146 32.2
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 7.0e-12 74.3 143 31.5
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.1e-12 73.9 144 31.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.1e-12 73.9 145 31.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.2e-11 73.6 149 32.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.2e-11 73.6 143 32.9
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.2e-11 73.6 143 32.9
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.6e-11 73.2 149 32.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.6e-11 73.2 143 31.5
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-11 73.2 143 31.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-11 73.2 143 31.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.0e-11 72.8 134 35.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-11 72.8 143 31.5
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.7e-11 72.4 139 34.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.5e-11 72.0 144 34.7
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.5e-11 72.0 147 33.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.5e-11 71.6 147 32.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.5e-11 71.6 147 32.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.5e-11 71.6 147 33.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.5e-11 71.6 147 32.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 4.5e-11 71.6 146 32.2
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.5e-11 71.6 145 33.1
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.5e-11 71.6 145 33.1
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 5.9e-11 71.2 143 33.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 5.9e-11 71.2 143 31.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 7.7e-11 70.9 146 31.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 7.7e-11 70.9 146 31.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.0e-10 70.5 147 32.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.0e-10 70.5 143 32.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.0e-10 70.5 143 32.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.0e-10 70.5 143 32.2
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.0e-10 70.5 150 32.7
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.0e-10 70.5 115 35.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-10 70.1 147 32.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.3e-10 70.1 147 32.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-10 70.1 147 32.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.3e-10 70.1 144 31.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.3e-10 70.1 147 32.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.3e-10 70.1 149 32.2
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.7e-10 69.7 142 32.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.7e-10 69.7 146 30.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-10 69.7 141 31.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.3e-10 69.3 147 32.0
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.3e-10 69.3 147 32.7
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.3e-10 69.3 143 32.2
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.3e-10 69.3 147 32.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.3e-10 69.3 147 33.3
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.3e-10 69.3 149 32.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.9e-10 68.9 147 33.3
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.9e-10 68.9 149 31.5
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.9e-10 68.9 149 32.2
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.9e-10 68.9 146 30.8
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.9e-10 68.9 146 30.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.8e-10 68.6 149 32.9
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.8e-10 68.6 147 32.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 3.8e-10 68.6 147 33.3
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.8e-10 68.6 149 32.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.8e-10 68.6 147 32.7
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 3.8e-10 68.6 143 33.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.8e-10 68.6 146 30.8
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 5.0e-10 68.2 146 30.8
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.0e-10 68.2 146 30.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 5.0e-10 68.2 146 29.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 6.6e-10 67.8 149 30.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 6.6e-10 67.8 146 28.8
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.6e-10 67.8 147 32.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 6.6e-10 67.8 147 32.7
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 6.6e-10 67.8 147 32.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 6.6e-10 67.8 143 32.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 6.6e-10 67.8 146 30.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 6.6e-10 67.8 146 30.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.6e-10 67.8 138 31.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 8.6e-10 67.4 139 31.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 8.6e-10 67.4 139 31.7
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 8.6e-10 67.4 149 30.9
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 8.6e-10 67.4 147 32.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 8.6e-10 67.4 142 33.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 8.6e-10 67.4 149 32.9
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 8.6e-10 67.4 143 30.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 8.6e-10 67.4 146 28.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.1e-09 67.0 147 32.0
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.1e-09 67.0 146 30.8
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.1e-09 67.0 146 30.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.1e-09 67.0 146 30.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.1e-09 67.0 147 32.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.5e-09 66.6 147 32.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-09 66.6 149 31.5
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.5e-09 66.6 149 31.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.5e-09 66.6 146 30.1
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.9e-09 66.2 147 32.0
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.9e-09 66.2 149 32.2
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.5e-09 65.9 143 30.8
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.5e-09 65.9 146 30.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.5e-09 65.9 149 30.9
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.3e-09 65.5 147 32.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.3e-09 65.5 144 31.9
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.2e-09 65.1 149 32.2
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-09 65.1 120 34.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 7.2e-09 64.3 141 31.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.2e-09 64.3 150 30.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.2e-09 64.3 150 30.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 7.2e-09 64.3 150 30.7
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 9.5e-09 63.9 149 31.5
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 9.5e-09 63.9 121 34.7
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.2e-08 63.5 148 32.4
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.6e-08 63.2 146 29.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.6e-08 63.2 95 37.9
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.6e-08 63.2 151 32.5
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.6e-08 63.2 146 29.5
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.6e-08 63.2 145 29.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.1e-08 62.8 149 31.5
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.1e-08 62.8 146 29.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.1e-08 62.8 139 32.4
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.1e-08 62.8 151 31.8
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.1e-08 62.8 119 35.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.8e-08 62.4 151 33.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-08 62.0 127 33.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 3.6e-08 62.0 146 29.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 4.7e-08 61.6 143 28.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.7e-08 61.6 148 31.8
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.1e-08 61.2 147 32.7
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 8.0e-08 60.8 117 34.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-07 60.5 120 35.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.4e-07 60.1 144 29.2
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 3.0e-07 58.9 122 32.8
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.0e-07 58.5 45 62.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.2e-07 58.2 116 33.6
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.2e-07 58.2 132 33.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-06 57.0 112 35.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.2e-06 57.0 145 30.3
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.6e-06 55.8 97 37.1


User provided reference genes

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