Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 0.0e+00 3233.4 1650 100.0
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 0.0e+00 1921.4 1651 60.3
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 0.0e+00 1760.0 1579 58.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 0.0e+00 1739.5 1658 55.4
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1729.5 1629 55.4
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1728.0 1606 55.8
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1726.5 1646 55.0
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1721.8 1603 55.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1721.1 1643 54.5
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1719.5 1648 54.9
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1718.4 1624 54.8
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1716.8 1650 54.9
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1716.0 1668 54.7
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1716.0 1590 55.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1710.7 1634 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 0.0e+00 1710.3 1511 58.2
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1709.5 1678 54.1
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1708.7 1645 54.5
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1707.6 1649 55.2
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1704.9 1622 54.4
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1703.3 1590 55.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1699.9 1630 55.1
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1699.9 1646 54.3
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1698.7 1649 54.0
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1698.3 1631 54.6
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1695.6 1653 53.8
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1693.7 1669 54.4
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1693.7 1631 54.6
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1693.7 1643 54.3
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1689.5 1626 53.6
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1686.4 1677 53.7
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1686.0 1590 55.2
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1685.2 1603 54.6
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1684.5 1647 54.3
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1684.1 1645 53.4
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1681.0 1616 54.9
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1681.0 1713 52.4
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1680.6 1660 53.8
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1679.5 1668 54.4
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1679.1 1687 53.1
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1678.3 1623 54.8
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1677.1 1650 54.2
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1675.2 1612 55.2
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1673.7 1626 55.2
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1672.1 1642 54.8
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1671.0 1642 54.1
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1666.0 1619 54.2
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1664.8 1636 53.5
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1664.4 1637 53.7
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1660.6 1687 52.5
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1657.1 1597 54.5
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1656.0 1696 52.5
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1654.8 1652 54.1
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1653.3 1629 53.8
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1651.7 1598 54.1
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1651.0 1659 53.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1650.2 1660 53.4
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1649.8 1657 53.4
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1649.0 1681 53.2
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1648.6 1623 53.8
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1647.1 1605 53.6
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1642.5 1646 53.4
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1642.1 1660 52.8
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1641.7 1603 53.3
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1637.9 1674 52.2
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1637.1 1621 53.2
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1633.2 1635 53.3
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1633.2 1674 51.9
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 1633.2 1630 53.4
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1632.5 1606 53.9
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1632.1 1648 53.1
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1630.5 1590 54.0
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1628.2 1585 54.2
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1625.1 1632 53.1
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 1624.8 1634 52.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1618.6 1632 52.7
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1617.4 1650 52.7
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1615.5 1638 52.2
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1612.8 1607 53.3
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1612.0 1663 52.6
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1610.5 1663 52.4
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1609.3 1801 49.4
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1608.6 1622 52.6
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1604.0 1674 52.3
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1583.5 1649 52.1
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1557.7 1532 53.7
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1555.8 1794 48.6
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1528.8 1612 50.6
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1521.1 1607 51.2
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1518.1 1701 48.9
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1516.9 1630 51.1
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 0.0e+00 1513.8 1718 48.6
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1508.8 1615 50.7
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1505.0 1683 49.0
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1477.2 1693 48.5
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1464.1 1337 56.5
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 0.0e+00 1424.5 1671 48.4
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1419.8 1344 55.7
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1385.2 1632 47.4
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1334.7 1635 46.5
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1221.1 1597 45.2
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1185.2 1296 49.6
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1150.2 1103 54.8
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1116.3 1487 43.8
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1090.9 1045 54.1
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 4.4e-266 922.5 1671 37.5
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 2.0e-250 870.5 726 62.1
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 4.9e-249 865.9 966 49.8
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 8.7e-238 828.6 609 67.5
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 2.2e-225 787.3 1056 44.2
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 3.9e-222 776.5 1728 32.4
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 8.8e-222 775.4 942 46.5
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 5.7e-213 746.1 512 70.1
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.3e-209 734.9 1235 37.7
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.1e-203 715.3 979 42.0
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 9.5e-184 649.0 1374 34.1
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.1e-171 609.0 722 46.4
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.5e-168 597.8 889 40.8
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 6.4e-156 556.6 542 51.8
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 3.9e-153 547.4 519 53.9
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 6.6e-153 546.6 565 50.4
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.1e-146 525.0 300 81.3
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 4.9e-140 503.8 1787 27.5
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 9.3e-139 499.6 753 38.8
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.7e-137 495.4 1589 26.9
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.0e-133 481.9 269 82.2
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 2.6e-133 481.5 281 79.7
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.3e-127 462.6 252 84.1
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 6.7e-113 413.7 237 79.3
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 2.4e-110 405.2 218 84.9
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 6.3e-95 354.0 277 63.9
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.6e-85 322.8 329 51.1
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 8.3e-79 300.4 262 60.3
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 5.5e-75 287.7 306 48.7
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 6.8e-73 280.8 575 33.7
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 4.7e-66 258.1 316 45.9
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.9e-63 248.1 222 55.4
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 1.0e-60 240.4 187 64.7
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 2.1e-42 179.5 103 80.6
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-35 156.4 85 82.4
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 1.6e-34 153.3 118 61.9
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 4.0e-33 148.7 88 79.5
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 4.0e-33 148.7 99 70.7
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-29 136.7 88 70.5
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 7.8e-29 134.4 88 70.5
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 1.0e-28 134.0 144 47.2
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.3e-28 132.9 274 31.8
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 7.3e-27 127.9 75 77.3
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.2e-24 120.6 166 39.8
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 7.6e-24 117.9 151 44.4
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 7.6e-24 117.9 151 44.4
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 2.7e-21 109.4 93 60.2
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 2.7e-21 109.4 60 80.0
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 1.0e-20 107.5 54 85.2
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 4.8e-18 98.6 111 44.1
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 4.8e-18 98.6 117 41.9
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.9e-14 86.7 113 44.2
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 9.3e-14 84.3 66 57.6
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 6.0e-13 81.6 57 64.9
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 3.0e-12 79.3 48 70.8
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 6.7e-12 78.2 111 41.4
VMungo0251G1240 Vigna mungo HOM05D000087 ORTHO05D012327 1.3e-10 73.9 58 62.1
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 2.1e-10 73.2 102 38.2
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 6.2e-10 71.6 104 35.6
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 4.0e-09 68.9 115 33.9
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 2.0e-08 66.6 144 31.2
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 3.4e-08 65.9 159 30.2
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 3.8e-07 62.4 36 69.4
SEGI_14626 Sequoiadendron giganteum HOM05D003697 ORTHO05D012276 3.8e-07 62.4 44 68.2
SEGI_31193 Sequoiadendron giganteum HOM05D000279 ORTHO05D012276 3.8e-07 62.4 44 68.2
TPR.G13304 Trifolium pratense HOM05D000488 ORTHO05D000347 3.2e-06 59.3 188 26.6
Prupe.8G247500 Prunus persica HOM05D000488 ORTHO05D000347 4.2e-06 58.9 195 24.1
Duzib151G0826 Durio zibethinus HOM05D000488 ORTHO05D000347 9.3e-06 57.8 175 25.7


User provided reference genes

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