Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.8e-126 454.5 230 100.0
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.7e-95 351.3 230 75.2
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.6e-89 332.0 230 72.2
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.6e-89 332.0 230 72.2
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 4.4e-47 192.2 132 65.2
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.9e-46 189.5 156 59.0
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 4.9e-46 188.7 148 60.8
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 8.3e-46 188.0 148 60.8
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 8.3e-46 188.0 161 55.9
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.9e-45 186.8 145 59.3
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.9e-45 186.8 206 50.5
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 3.2e-45 186.0 195 51.3
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 3.2e-45 186.0 148 59.5
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 3.2e-45 186.0 148 59.5
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.1e-45 185.7 165 55.2
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 5.4e-45 185.3 161 56.5
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 5.4e-45 185.3 144 59.0
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.4e-45 185.3 144 59.0
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 5.4e-45 185.3 144 59.0
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.2e-44 184.1 148 57.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.6e-44 183.7 148 58.1
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.1e-44 183.3 188 51.6
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.7e-44 183.0 149 59.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 3.5e-44 182.6 205 46.3
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 3.5e-44 182.6 156 56.4
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 3.5e-44 182.6 155 57.4
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 4.6e-44 182.2 168 54.2
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 4.6e-44 182.2 168 54.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 4.6e-44 182.2 136 58.8
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 6.0e-44 181.8 130 63.1
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 6.0e-44 181.8 143 58.7
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 6.0e-44 181.8 131 63.4
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 7.8e-44 181.4 129 62.0
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.0e-43 181.0 129 65.1
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.0e-43 181.0 148 56.1
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.3e-43 180.6 148 56.1
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.3e-43 180.6 130 62.3
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.7e-43 180.3 156 57.7
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.7e-43 180.3 148 57.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.7e-43 180.3 148 58.1
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.7e-43 180.3 148 57.4
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 2.3e-43 179.9 143 58.0
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 2.3e-43 179.9 148 56.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 2.3e-43 179.9 158 54.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 3.0e-43 179.5 148 56.1
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.0e-43 179.5 148 56.1
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 3.0e-43 179.5 163 54.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 3.9e-43 179.1 127 65.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 3.9e-43 179.1 148 56.1
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 3.9e-43 179.1 140 60.7
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 3.9e-43 179.1 131 62.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 6.6e-43 178.3 169 54.4
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 8.6e-43 177.9 152 55.9
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 8.6e-43 177.9 140 60.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.1e-42 177.6 149 58.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.1e-42 177.6 159 54.1
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.5e-42 177.2 127 65.4
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.5e-42 177.2 151 57.6
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.5e-42 177.2 131 61.1
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.5e-42 177.2 131 61.1
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.5e-42 177.2 130 63.1
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.9e-42 176.8 152 56.6
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.9e-42 176.8 152 55.9
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 1.9e-42 176.8 148 55.4
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.9e-42 176.8 134 60.4
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.5e-42 176.4 157 54.8
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 2.5e-42 176.4 211 43.6
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.3e-42 176.0 152 55.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 4.3e-42 175.6 152 55.9
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.3e-42 175.6 152 55.9
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 4.3e-42 175.6 152 55.9
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 5.6e-42 175.3 152 55.9
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 5.6e-42 175.3 143 57.3
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 5.6e-42 175.3 131 61.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 5.6e-42 175.3 134 61.2
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 5.6e-42 175.3 143 57.3
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 5.6e-42 175.3 228 43.9
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 9.5e-42 174.5 131 61.1
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 9.5e-42 174.5 127 63.0
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 9.5e-42 174.5 151 56.3
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 9.5e-42 174.5 150 55.3
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-41 174.1 127 63.8
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.2e-41 174.1 127 63.8
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.2e-41 174.1 217 45.2
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.6e-41 173.7 131 61.1
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 2.1e-41 173.3 150 56.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 2.1e-41 173.3 133 63.2
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 3.6e-41 172.6 143 56.6
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 3.6e-41 172.6 143 56.6
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 3.6e-41 172.6 149 56.4
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 4.7e-41 172.2 139 58.3
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 4.7e-41 172.2 135 60.0
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 4.7e-41 172.2 132 59.1
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 6.2e-41 171.8 157 53.5
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 8.1e-41 171.4 151 53.0
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 8.1e-41 171.4 151 54.3
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 8.1e-41 171.4 131 60.3
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 8.1e-41 171.4 133 61.7
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.1e-40 171.0 143 55.2
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.1e-40 171.0 130 60.8
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.1e-40 171.0 129 60.5
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 2.3e-40 169.9 143 55.9
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.1e-40 169.5 143 55.2
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 3.1e-40 169.5 134 59.0
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 4.0e-40 169.1 183 45.9
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 4.0e-40 169.1 148 54.1
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 5.2e-40 168.7 129 59.7
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 6.8e-40 168.3 160 52.5
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 8.9e-40 167.9 122 63.9
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 8.9e-40 167.9 124 63.7
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.2e-39 167.5 147 55.8
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.2e-39 167.5 125 62.4
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 2.0e-39 166.8 123 64.2
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 3.4e-39 166.0 130 60.8
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 4.1e-37 159.1 149 53.7
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 5.4e-37 158.7 117 64.1
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.1e-37 158.3 124 60.5
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.2e-36 157.5 179 48.0
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.6e-33 147.1 124 55.6
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 1.1e-32 144.4 183 48.1
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.1e-27 125.6 126 51.6
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.5e-26 123.2 130 52.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 2.1e-25 120.2 131 48.9
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 9.0e-24 114.8 115 58.3
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 1.3e-22 110.9 121 48.8
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.9e-22 109.8 78 64.1
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 4.9e-22 109.0 138 44.9
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 6.4e-22 108.6 77 64.9
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 3.0e-19 99.8 117 44.4
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-15 87.0 79 51.9
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.1e-10 71.2 53 58.5
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.3e-10 69.7 46 63.0
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 5.6e-10 68.9 58 55.2
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.8e-09 66.6 43 65.1
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.1e-08 64.7 54 53.7
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 4.0e-08 62.8 132 39.4
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.0e-06 58.2 49 53.1
Pp3c19_2290 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.2e-06 57.0 38 68.4


User provided reference genes

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