Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.3e-128 462.2 229 100.0
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.8e-101 372.9 229 76.4
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 5.3e-101 371.3 227 76.2
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.2e-100 370.2 227 76.2
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.2e-100 370.2 227 75.8
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.2e-100 370.2 229 75.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.2e-100 370.2 227 76.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-100 369.4 226 75.2
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-100 369.4 226 75.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.0e-100 369.4 227 75.8
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 2.6e-100 369.0 227 75.8
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 2.6e-100 369.0 227 75.8
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.6e-100 369.0 226 76.1
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.6e-100 369.0 226 76.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.4e-100 368.6 227 75.8
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 3.4e-100 368.6 229 75.1
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 4.5e-100 368.2 227 75.8
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 4.5e-100 368.2 227 75.8
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.5e-100 368.2 229 74.7
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 5.8e-100 367.9 227 75.8
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 7.6e-100 367.5 229 75.1
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 7.6e-100 367.5 229 74.7
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 7.6e-100 367.5 227 76.2
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-99 367.1 226 75.7
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.0e-99 367.1 229 74.7
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.3e-99 366.7 227 75.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.3e-99 366.7 227 75.8
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.3e-99 366.7 227 74.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.7e-99 366.3 229 75.1
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.7e-99 366.3 227 74.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.2e-99 365.9 227 75.3
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.2e-99 365.9 229 75.1
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.2e-99 365.9 227 75.3
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.9e-99 365.5 227 74.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.9e-99 365.5 227 75.3
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.9e-99 365.5 229 74.7
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 3.8e-99 365.2 227 74.9
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 3.8e-99 365.2 227 74.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 4.9e-99 364.8 227 75.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 4.9e-99 364.8 227 75.3
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 6.5e-99 364.4 227 74.9
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.5e-99 364.4 227 74.4
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 8.4e-99 364.0 229 74.2
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.4e-98 363.2 229 73.4
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.4e-98 363.2 227 74.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 3.2e-98 362.1 229 73.4
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 3.2e-98 362.1 227 73.6
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 3.2e-98 362.1 227 74.9
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 4.2e-98 361.7 229 74.2
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 5.5e-98 361.3 227 74.4
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 7.1e-98 360.9 229 74.2
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 7.1e-98 360.9 229 72.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.1e-98 360.9 227 73.1
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.1e-98 360.9 227 73.1
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 9.3e-98 360.5 225 75.1
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.2e-97 360.1 227 72.7
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.2e-97 360.1 229 73.8
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 1.6e-97 359.8 227 73.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.6e-97 359.8 227 72.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.6e-97 359.8 227 74.4
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.1e-97 359.4 229 72.9
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.1e-97 359.4 227 74.9
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 3.5e-97 358.6 227 73.6
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.6e-97 358.2 229 73.4
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 6.0e-97 357.8 227 73.1
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 7.9e-97 357.5 229 72.5
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.8e-96 356.3 227 72.7
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.8e-96 356.3 229 72.9
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.8e-96 356.3 227 72.2
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.8e-96 356.3 229 72.9
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 6.7e-96 354.4 227 73.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 226 73.5
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 227 73.1
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 8.7e-96 354.0 220 74.5
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 2.5e-95 352.4 227 72.2
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.5e-95 352.4 227 72.7
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 71.8
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 72.2
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 72.2
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 72.2
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 72.2
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 73.6
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 5.7e-95 351.3 226 72.1
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 7.4e-95 350.9 227 71.8
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 7.4e-95 350.9 227 71.8
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 2.8e-94 349.0 227 71.8
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 2.8e-94 349.0 227 71.8
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.8e-94 349.0 231 71.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 3.7e-94 348.6 227 71.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 6.3e-94 347.8 231 70.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.1e-93 347.1 227 70.9
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.4e-93 346.7 227 71.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.8e-93 346.3 227 71.4
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.1e-93 345.5 227 71.4
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.1e-93 345.5 236 69.5
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.1e-93 345.1 229 72.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 5.3e-93 344.7 227 71.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 6.9e-93 344.4 226 71.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.2e-92 343.6 225 71.6
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 7.7e-92 340.9 213 75.1
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 70.4
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-90 337.0 254 64.6
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 2.5e-90 335.9 226 69.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 9.4e-90 334.0 227 68.7
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 8.8e-88 327.4 227 69.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.1e-87 327.0 204 75.0
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.1e-85 320.5 204 74.5
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.2e-84 317.0 192 76.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.2e-84 317.0 202 73.8
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.0e-84 316.2 198 73.7
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.0e-83 313.9 196 76.0
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 1.7e-83 313.2 191 77.0
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 2.2e-83 312.8 201 72.6
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 5.0e-83 311.6 190 76.3
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 4.2e-82 308.5 195 73.8
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 7.2e-82 307.8 187 77.0
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-81 306.2 227 67.4
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.7e-80 301.2 249 61.0
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.6e-79 299.3 231 63.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 7.4e-79 297.7 185 77.3
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 7.0e-77 291.2 229 62.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.7e-75 286.6 185 73.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 6.3e-70 268.1 226 58.8
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 4.5e-68 261.9 161 73.9
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 4.5e-68 261.9 164 76.2
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.2e-63 247.3 355 40.6
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.1e-61 240.7 161 67.7
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.4e-55 218.8 159 59.7
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 5.7e-55 218.4 154 67.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.9e-48 194.5 122 71.3
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.0e-45 184.9 135 61.5
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.1e-25 120.2 140 43.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.6e-23 111.7 66 78.8
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.3e-18 95.9 62 59.7
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.8e-14 82.8 124 46.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 2.4e-13 80.1 153 34.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 5.4e-13 79.0 45 75.6
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.0e-11 74.7 63 52.4
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-10 70.5 52 57.7
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.1e-08 64.7 64 45.3


User provided reference genes

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