Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.2e-46 188.7 102 100.0
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.8e-16 89.4 87 57.5
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 4.3e-10 68.2 66 56.1
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 4.3e-10 68.2 70 54.3
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 2.1e-09 65.9 77 51.9
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 2.1e-09 65.9 77 51.9
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 4.7e-09 64.7 90 47.8
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-08 63.2 75 52.0
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-08 63.2 82 48.8
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-08 63.2 75 52.0
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.8e-08 62.8 55 60.0
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.8e-08 62.8 100 45.0
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.8e-08 62.8 90 43.3
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 1.8e-08 62.8 57 56.1
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 2.3e-08 62.4 75 52.0
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.3e-08 62.4 71 53.5
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 2.3e-08 62.4 89 48.3
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 3.1e-08 62.0 71 53.5
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.1e-08 62.0 73 53.4
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 3.1e-08 62.0 58 58.6
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 5.2e-08 61.2 73 50.7
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 6.8e-08 60.8 58 58.6
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 8.9e-08 60.5 56 58.9
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 8.9e-08 60.5 78 50.0
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 8.9e-08 60.5 80 48.8
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 8.9e-08 60.5 68 50.0
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 8.9e-08 60.5 56 58.9
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.2e-07 60.1 63 54.0
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 1.2e-07 60.1 95 41.1
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.2e-07 60.1 68 54.4
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 1.5e-07 59.7 65 55.4
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 1.5e-07 59.7 78 50.0
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 1.5e-07 59.7 51 62.7
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 2.0e-07 59.3 95 41.1
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 2.0e-07 59.3 73 49.3
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 2.0e-07 59.3 68 52.9
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 2.0e-07 59.3 56 57.1
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 2.0e-07 59.3 82 48.8
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 2.6e-07 58.9 59 54.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 2.6e-07 58.9 46 67.4
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 2.6e-07 58.9 46 67.4
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 2.6e-07 58.9 46 67.4
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 2.6e-07 58.9 46 67.4
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.6e-07 58.9 92 44.6
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.6e-07 58.9 97 40.2
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 2.6e-07 58.9 46 67.4
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 2.6e-07 58.9 92 42.4
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 3.4e-07 58.5 72 50.0
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.4e-07 58.5 56 57.1
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 3.4e-07 58.5 92 42.4
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 4.4e-07 58.2 104 45.2
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 4.4e-07 58.2 87 43.7
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 5.8e-07 57.8 76 44.7
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 5.8e-07 57.8 69 50.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 7.5e-07 57.4 84 41.7
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 7.5e-07 57.4 50 64.0
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 7.5e-07 57.4 88 42.0
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 9.8e-07 57.0 57 54.4
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 9.8e-07 57.0 65 53.8
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 9.8e-07 57.0 56 57.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 9.8e-07 57.0 57 54.4
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 1.3e-06 56.6 103 39.8
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 1.7e-06 56.2 84 44.0
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 2.2e-06 55.8 48 60.4
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 2.9e-06 55.5 57 54.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 2.9e-06 55.5 80 42.5
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.9e-06 55.5 40 67.5
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.9e-06 55.5 40 67.5
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 3.7e-06 55.1 97 46.4
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 4.9e-06 54.7 57 50.9
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 4.9e-06 54.7 98 41.8
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 4.9e-06 54.7 99 38.4
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 6.4e-06 54.3 46 67.4
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 8.3e-06 53.9 96 43.8
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 8.3e-06 53.9 69 50.7
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 8.3e-06 53.9 69 50.7
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 8.3e-06 53.9 63 49.2
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 8.3e-06 53.9 97 43.3
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 8.3e-06 53.9 90 43.3
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 8.3e-06 53.9 101 42.6
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 8.3e-06 53.9 76 44.7
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 8.3e-06 53.9 66 48.5
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 8.3e-06 53.9 66 50.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 8.3e-06 53.9 88 44.3


User provided reference genes

Program Settings