Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.3e-193 679.5 335 100.0
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 5.4e-163 577.8 292 96.6
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 5.7e-112 408.3 355 57.5
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 3.1e-102 375.9 328 56.1
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.7e-87 327.0 326 52.8
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.9e-87 326.2 333 50.8
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 8.3e-87 324.7 326 52.8
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 9.2e-86 321.2 335 51.6
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 1.2e-85 320.9 335 51.6
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.6e-85 320.5 335 51.3
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 4.6e-85 318.9 323 53.6
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 7.8e-85 318.2 346 52.0
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 8.6e-84 314.7 350 49.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.9e-83 313.5 345 50.1
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 9.5e-83 311.2 332 50.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.2e-82 310.8 329 50.8
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 2.1e-82 310.1 344 49.7
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 4.7e-82 308.9 325 52.3
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 8.0e-82 308.1 323 51.7
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.4e-81 307.4 342 48.8
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.8e-81 307.0 345 51.9
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 2.3e-81 306.6 333 49.8
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.3e-81 306.6 325 51.7
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.1e-81 306.2 347 49.0
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 4.0e-81 305.8 324 50.9
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 6.8e-81 305.1 328 50.9
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 8.9e-81 304.7 346 48.8
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.5e-80 303.9 324 50.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 2.6e-80 303.1 338 48.5
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 2.6e-80 303.1 342 49.1
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 2.6e-80 303.1 304 53.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 3.4e-80 302.8 342 48.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 3.4e-80 302.8 334 49.7
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 4.4e-80 302.4 346 47.4
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 4.4e-80 302.4 342 48.2
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 5.8e-80 302.0 336 50.3
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 9.8e-80 301.2 356 46.9
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 9.8e-80 301.2 337 50.1
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.3e-79 300.8 354 47.2
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.3e-79 300.8 325 50.8
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.7e-79 300.4 350 48.3
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 2.2e-79 300.1 341 49.3
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 4.9e-79 298.9 339 48.4
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 4.9e-79 298.9 356 46.6
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 6.4e-79 298.5 341 47.5
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.1e-78 297.7 340 49.4
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.4e-78 297.4 356 46.3
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.4e-78 297.4 323 49.5
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.4e-78 296.6 320 50.0
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 3.2e-78 296.2 351 47.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 3.2e-78 296.2 351 47.3
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.2e-78 296.2 335 48.7
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 4.1e-78 295.8 323 48.6
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 7.0e-78 295.0 349 46.4
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 7.0e-78 295.0 351 47.3
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 7.0e-78 295.0 351 47.3
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 9.2e-78 294.7 335 49.3
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 1.2e-77 294.3 341 48.4
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.6e-77 293.9 358 44.1
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 1.6e-77 293.9 346 47.1
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.6e-77 293.9 364 45.6
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.0e-77 293.5 352 46.3
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.7e-77 293.1 328 48.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 2.7e-77 293.1 334 47.9
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 3.5e-77 292.7 331 48.0
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 1.0e-76 291.2 344 47.1
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.0e-76 291.2 342 45.9
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.0e-76 291.2 347 47.6
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.0e-76 291.2 332 47.6
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-76 290.8 339 46.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.7e-76 290.4 336 46.7
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.3e-76 290.0 357 44.3
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.3e-76 290.0 339 46.0
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 2.3e-76 290.0 326 48.2
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.3e-76 290.0 326 48.2
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 3.0e-76 289.7 315 48.6
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 3.9e-76 289.3 348 47.4
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 5.0e-76 288.9 339 46.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 5.0e-76 288.9 370 45.9
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 6.6e-76 288.5 388 44.1
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 6.6e-76 288.5 336 47.3
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 6.6e-76 288.5 356 45.5
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.1e-75 287.7 369 45.0
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-75 287.3 339 45.4
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.9e-75 287.0 356 45.5
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.9e-75 287.0 332 46.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.9e-75 287.0 335 48.1
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.3e-75 286.2 332 45.8
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 4.3e-75 285.8 367 45.5
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 9.5e-75 284.6 303 51.2
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 9.5e-75 284.6 330 47.3
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 9.5e-75 284.6 343 46.9
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.2e-74 284.3 332 45.8
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 1.6e-74 283.9 303 50.5
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.6e-74 283.9 348 46.6
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 3.6e-74 282.7 352 44.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 6.2e-74 282.0 365 45.2
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.1e-74 281.6 352 44.3
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 8.1e-74 281.6 311 48.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.1e-73 281.2 350 45.1
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 1.1e-73 281.2 350 45.1
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 1.8e-73 280.4 348 46.3
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-73 280.4 348 46.6
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-73 280.4 348 46.3
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.8e-73 280.4 358 45.0
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.3e-73 280.0 365 44.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.2e-72 277.7 348 45.7
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-72 277.7 367 42.8
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 1.5e-72 277.3 329 46.2
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.5e-72 277.3 348 44.3
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.5e-72 277.3 293 51.9
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 2.0e-72 276.9 347 45.8
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.0e-72 276.9 349 45.0
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.3e-71 274.2 283 54.1
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 4.9e-71 272.3 345 44.6
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.1e-70 271.2 326 45.7
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.6e-69 267.3 339 44.8
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.9e-68 262.7 290 50.7
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 2.1e-66 256.9 311 46.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-65 254.2 160 72.5
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 8.9e-65 251.5 157 73.2
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 3.4e-64 249.6 321 44.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 4.4e-64 249.2 336 42.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 1.2e-61 241.1 299 47.2
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 1.3e-60 237.7 309 42.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.3e-54 214.9 310 42.6
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.3e-54 214.9 310 42.6
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.1e-51 208.0 282 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 3.3e-51 206.5 276 44.2
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 6.2e-50 202.2 114 75.4
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.4e-48 196.4 118 72.9
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 8.1e-42 175.3 103 74.8
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 3.4e-40 169.9 103 71.8
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.1e-33 146.7 156 46.8
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-32 144.8 223 39.5
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 3.2e-30 136.7 81 72.8
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 7.1e-30 135.6 237 35.9
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 6.0e-29 132.5 239 38.9
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.3e-20 104.0 225 35.6
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.8e-18 96.3 88 48.9
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-12 77.0 75 45.3
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.4e-11 73.2 88 42.0
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.2e-10 70.9 62 61.3
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.5e-08 64.7 75 42.7


User provided reference genes

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