Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 4.4e-147 524.6 270 100.0
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 4.9e-21 105.9 179 35.8
Pp3c3_3640 Physcomitrium patens HOM05D022662 ORTHO05D006223 5.4e-20 102.4 164 37.2
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.6e-19 100.9 203 30.0
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 6.6e-18 95.5 168 32.1
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.3e-15 87.0 164 33.5
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 8.9e-15 85.1 175 29.7
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.1e-12 78.2 131 33.6
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 5.4e-12 75.9 136 31.6
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.1e-12 75.5 172 30.8
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 9.2e-12 75.1 135 31.9
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.6e-11 72.8 133 33.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 7.8e-11 72.0 143 30.8
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.0e-10 71.6 115 33.0
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.0e-10 71.6 201 29.4
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 6.6e-10 68.9 151 25.8
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 6.6e-10 68.9 172 32.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.1e-09 68.2 136 27.2
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.5e-09 67.8 210 27.6
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.5e-09 67.8 134 28.4
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.9e-09 67.4 150 28.0
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.3e-09 66.2 110 31.8
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.6e-09 65.1 152 27.6
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.6e-08 64.3 164 23.2
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.6e-08 64.3 114 30.7
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.6e-08 64.3 173 25.4
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 3.6e-08 63.2 83 37.3
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.7e-08 62.8 161 29.8
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 4.7e-08 62.8 131 29.0
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 6.2e-08 62.4 137 31.4
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 6.2e-08 62.4 152 29.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 6.2e-08 62.4 167 27.5
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 8.1e-08 62.0 132 27.3
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 8.1e-08 62.0 153 28.1
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 8.1e-08 62.0 156 26.9
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.1e-07 61.6 166 28.3
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.1e-07 61.6 175 26.3
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.4e-07 61.2 125 28.0
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-07 61.2 130 28.5
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.4e-07 61.2 79 41.8
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.4e-07 61.2 101 33.7
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.4e-07 61.2 101 33.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.4e-07 60.5 145 29.7
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 4.0e-07 59.7 137 28.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 5.2e-07 59.3 118 32.2
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 5.2e-07 59.3 169 27.2
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 8.9e-07 58.5 154 26.0
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 8.9e-07 58.5 112 31.2
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 8.9e-07 58.5 140 25.7
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-06 58.2 152 26.3
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 1.5e-06 57.8 148 27.7
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 1.5e-06 57.8 125 32.0
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.5e-06 57.8 130 30.8
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.5e-06 57.8 80 37.5
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.5e-06 57.8 80 37.5
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-06 57.8 110 31.8
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.5e-06 57.8 153 25.5
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.5e-06 57.8 178 28.1
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-06 57.0 192 27.1
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 2.6e-06 57.0 119 30.3
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.6e-06 57.0 143 26.6
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.6e-06 57.0 91 31.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.6e-06 57.0 152 24.3
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.4e-06 56.6 170 22.4
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 3.4e-06 56.6 127 29.9
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 3.4e-06 56.6 141 25.5
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.4e-06 56.2 146 25.3
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 4.4e-06 56.2 129 27.9
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 5.8e-06 55.8 91 33.0
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 7.6e-06 55.5 135 28.9
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 7.6e-06 55.5 123 28.5
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 7.6e-06 55.5 133 29.3
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 9.9e-06 55.1 148 27.0
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 9.9e-06 55.1 78 34.6
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.9e-06 55.1 116 30.2
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 9.9e-06 55.1 121 29.8


User provided reference genes

Program Settings