Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 9.6e-53 209.9 108 100.0
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 3.3e-21 105.1 100 54.0
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 6.3e-20 100.9 99 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 2.6e-18 95.5 100 51.0
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 3.8e-17 91.7 99 45.5
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.8e-17 91.7 99 49.5
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 8.5e-17 90.5 99 45.5
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 8.5e-17 90.5 100 47.0
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 8.5e-17 90.5 99 46.5
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 1.1e-16 90.1 99 46.5
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.1e-16 90.1 102 51.0
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.4e-16 89.7 110 44.5
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.9e-16 89.4 100 45.0
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 3.2e-16 88.6 99 44.4
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 4.2e-16 88.2 99 45.5
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 5.5e-16 87.8 99 46.5
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 5.5e-16 87.8 109 45.9
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.5e-16 87.8 104 44.2
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 5.5e-16 87.8 101 45.5
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 5.5e-16 87.8 104 44.2
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 5.5e-16 87.8 102 45.1
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 7.2e-16 87.4 102 47.1
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 7.2e-16 87.4 100 45.0
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 7.2e-16 87.4 99 42.4
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 9.4e-16 87.0 102 44.1
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 9.4e-16 87.0 102 46.1
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 9.4e-16 87.0 99 45.5
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 1.2e-15 86.7 100 45.0
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.2e-15 86.7 101 45.5
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.6e-15 86.3 102 45.1
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 1.6e-15 86.3 102 44.1
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 1.6e-15 86.3 100 45.0
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.6e-15 86.3 99 44.4
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 1.6e-15 86.3 102 44.1
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.6e-15 86.3 102 42.2
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.6e-15 86.3 99 45.5
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 2.1e-15 85.9 106 44.3
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.1e-15 85.9 99 44.4
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 2.7e-15 85.5 102 43.1
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 2.7e-15 85.5 102 43.1
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 2.7e-15 85.5 102 45.1
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.6e-15 85.1 98 45.9
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 3.6e-15 85.1 99 44.4
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 3.6e-15 85.1 102 43.1
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 3.6e-15 85.1 99 46.5
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 3.6e-15 85.1 102 45.1
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 3.6e-15 85.1 99 47.5
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 4.7e-15 84.7 100 45.0
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 4.7e-15 84.7 109 45.0
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 4.7e-15 84.7 101 45.5
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 6.1e-15 84.3 109 45.9
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 6.1e-15 84.3 106 43.4
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 6.1e-15 84.3 106 43.4
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 6.1e-15 84.3 99 43.4
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 6.1e-15 84.3 109 44.0
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.1e-15 84.3 102 43.1
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 6.1e-15 84.3 102 42.2
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 6.1e-15 84.3 99 42.4
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 8.0e-15 84.0 99 44.4
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 8.0e-15 84.0 99 43.4
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 8.0e-15 84.0 102 43.1
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 8.0e-15 84.0 99 47.5
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 8.0e-15 84.0 99 45.5
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 1.0e-14 83.6 106 43.4
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 1.0e-14 83.6 106 43.4
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 1.0e-14 83.6 106 43.4
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 1.0e-14 83.6 100 42.0
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 1.0e-14 83.6 99 43.4
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 1.0e-14 83.6 102 43.1
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.0e-14 83.6 100 42.0
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.0e-14 83.6 98 39.8
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.4e-14 83.2 109 45.0
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 1.4e-14 83.2 99 47.5
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.4e-14 83.2 102 43.1
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.4e-14 83.2 99 43.4
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.4e-14 83.2 99 42.4
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.8e-14 82.8 98 43.9
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.8e-14 82.8 99 44.4
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.8e-14 82.8 98 42.9
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 1.8e-14 82.8 99 46.5
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.3e-14 82.4 109 45.0
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 2.3e-14 82.4 98 43.9
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 2.3e-14 82.4 99 50.5
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 3.0e-14 82.0 99 42.4
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 3.9e-14 81.6 99 45.5
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 3.9e-14 81.6 99 45.5
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 5.2e-14 81.3 99 45.5
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 5.2e-14 81.3 102 43.1
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 5.2e-14 81.3 99 41.4
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 6.7e-14 80.9 99 42.4
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 8.8e-14 80.5 99 42.4
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.5e-13 79.7 99 41.4
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.5e-13 79.7 101 47.5
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.5e-13 79.7 96 46.9
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 2.0e-13 79.3 99 41.4
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 2.6e-13 79.0 97 42.3
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 2.6e-13 79.0 99 44.4
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 2.6e-13 79.0 102 41.2
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 2.6e-13 79.0 96 44.8
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 4.4e-13 78.2 99 38.4
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 4.4e-13 78.2 99 42.4
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 5.7e-13 77.8 108 39.8
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 5.7e-13 77.8 108 39.8
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 5.7e-13 77.8 99 38.4
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 5.7e-13 77.8 98 41.8
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 5.7e-13 77.8 98 41.8
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 7.4e-13 77.4 100 42.0
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 7.4e-13 77.4 99 38.4
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 7.4e-13 77.4 95 41.1
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.4e-13 77.4 97 42.3
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.4e-13 77.4 97 42.3
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 7.4e-13 77.4 94 44.7
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 9.7e-13 77.0 99 38.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 9.7e-13 77.0 100 40.0
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 9.7e-13 77.0 124 37.9
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.3e-12 76.6 99 41.4
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.7e-12 76.3 98 40.8
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 1.7e-12 76.3 99 47.5
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 4.8e-12 74.7 97 39.2
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.8e-11 72.8 100 38.0
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 2.4e-11 72.4 95 36.8
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.4e-11 72.4 117 36.8
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 5.3e-11 71.2 98 41.8
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 7.0e-11 70.9 89 47.2
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.5e-08 61.2 74 39.2
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 2.7e-07 58.9 57 49.1
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 4.0e-06 55.1 109 35.8


User provided reference genes

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