Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10700 Physcomitrium patens HOM05D007618 ORTHO05D009606 2.8e-94 348.6 176 100.0
Mapoly0032s0019 Marchantia polymorpha HOM05D007618 ORTHO05D009606 5.4e-53 211.5 166 60.2
Nn6g31724 Nelumbo nucifera HOM05D007618 ORTHO05D009606 8.0e-49 197.6 164 57.9
Manes.04G067600 Manihot esculenta HOM05D007618 ORTHO05D009606 5.2e-48 194.9 165 57.6
Thecc.06G045200 Theobroma cacao HOM05D007618 ORTHO05D009606 5.2e-48 194.9 164 57.3
TAR376G0137 Trochodendron aralioides HOM05D007618 ORTHO05D009606 1.2e-47 193.7 164 56.7
TAR628G0843 Trochodendron aralioides HOM05D007618 ORTHO05D009606 2.0e-47 193.0 164 57.3
MELO3C013504.2 Cucumis melo HOM05D007618 ORTHO05D009606 2.6e-47 192.6 164 57.3
Potri.004G204700 Populus trichocarpa HOM05D007618 ORTHO05D009606 2.6e-47 192.6 164 55.5
Hund06167 Selenicereus undatus HOM05D007618 ORTHO05D009606 2.6e-47 192.6 164 57.3
CsaV3_6G010180 Cucumis sativus L. HOM05D007618 ORTHO05D009606 3.4e-47 192.2 164 56.7
GSVIVG01023981001 Vitis vinifera HOM05D007618 ORTHO05D009606 3.4e-47 192.2 167 54.5
COL.COLO4_26755 Corchorus olitorius HOM05D007618 ORTHO05D009606 5.8e-47 191.4 157 57.3
HanXRQChr14g0459071 Helianthus annuus HOM05D007618 ORTHO05D009606 7.5e-47 191.0 168 54.8
PGR142G1310 Punica granatum HOM05D007618 ORTHO05D009606 7.5e-47 191.0 164 54.9
Dinv14162 Davidia involucrata HOM05D007618 ORTHO05D009606 9.8e-47 190.7 164 55.5
Gohir.D10G000400 Gossypium hirsutum HOM05D007618 ORTHO05D009606 9.8e-47 190.7 164 55.5
Lalb_Chr08g0246841 Lupinus albus HOM05D007618 ORTHO05D009606 9.8e-47 190.7 164 56.1
CiPaw.05G091300 Carya illinoinensis HOM05D007618 ORTHO05D009606 2.9e-46 189.1 164 56.1
Potri.009G165700 Populus trichocarpa HOM05D007618 ORTHO05D009606 4.9e-46 188.3 164 54.9
MSTRG.19948 Avicennia marina HOM05D007618 ORTHO05D009606 6.4e-46 188.0 164 53.7
FvH4_2g16570 Fragaria vesca HOM05D007618 ORTHO05D009606 6.4e-46 188.0 164 56.1
RcHm_v2.0_Chr6g0280641 Rosa chinensis HOM05D007618 ORTHO05D009606 6.4e-46 188.0 164 56.7
Sabra04G0138200 Salix brachista HOM05D007618 ORTHO05D009606 6.4e-46 188.0 164 54.9
Gorai.011G000800 Gossypium raimondii HOM05D002478 ORTHO05D003331 1.9e-45 186.4 161 54.7
PSO541G4833 Papaver somniferum HOM05D007618 ORTHO05D009606 1.9e-45 186.4 168 54.8
Glyma.06G000700 Glycine max HOM05D007618 ORTHO05D009606 2.4e-45 186.0 170 53.5
Sed0023624 Sechium edule HOM05D007618 ORTHO05D009606 2.4e-45 186.0 161 57.1
Solyc01g112170.3 Solanum lycopersicum HOM05D007618 ORTHO05D009606 2.4e-45 186.0 164 54.9
Sopen01g054220 Solanum pennellii HOM05D007618 ORTHO05D009606 2.4e-45 186.0 164 54.9
Hma1.2p1_0271F.1_g108950 Hydrangea macrophylla HOM05D007618 ORTHO05D009606 3.2e-45 185.7 158 55.1
ClCG02G010360 Citrullus lanatus HOM05D007618 ORTHO05D009606 4.1e-45 185.3 161 55.9
Prupe.8G177800 Prunus persica HOM05D007618 ORTHO05D009606 4.1e-45 185.3 164 55.5
HPP92_022157 Vanilla planifolia HOM05D007618 ORTHO05D009606 4.1e-45 185.3 164 53.0
Migut.B00014 Erythranthe guttata HOM05D007618 ORTHO05D009606 5.4e-45 184.9 161 53.4
Eucgr.I01514 Eucalyptus grandis HOM05D007618 ORTHO05D009606 5.4e-45 184.9 164 53.7
MD10G1139000 Malus domestica HOM05D007618 ORTHO05D009606 5.4e-45 184.9 165 55.8
Phvul.009G116000 Phaseolus vulgaris HOM05D007618 ORTHO05D009606 7.0e-45 184.5 165 53.3
Cc09_g10690 Coffea canephora HOM05D007618 ORTHO05D009606 1.2e-44 183.7 164 52.4
CANSAT64G2827 Cannabis sativa HOM05D007618 ORTHO05D009606 1.6e-44 183.3 157 55.4
Sabra09G0129500 Salix brachista HOM05D007618 ORTHO05D009606 2.7e-44 182.6 158 53.8
SalBow1G1919 Salvia bowleyana HOM05D007618 ORTHO05D009606 2.7e-44 182.6 160 54.4
Ciclev10029401m.g Citrus clementina HOM05D007618 ORTHO05D009606 3.5e-44 182.2 164 54.3
EL10Ac9g21249 Beta vulgaris HOM05D007618 ORTHO05D009606 1.0e-43 180.6 163 52.8
SGA_v2.0_scaffold32G13341 Striga asiatica HOM05D007618 ORTHO05D009606 1.3e-43 180.3 157 53.5
Lj1g0004638 Lotus japonicus HOM05D007618 ORTHO05D009606 1.7e-43 179.9 164 52.4
Duzib235G1428 Durio zibethinus HOM05D007618 ORTHO05D009606 2.3e-43 179.5 170 54.1
PSO675G2292 Papaver somniferum HOM05D007618 ORTHO05D009606 2.3e-43 179.5 165 54.5
arahy.Tifrunner.gnm1.ann1.I7PWT1 Arachis hypogaea HOM05D007618 ORTHO05D009606 3.0e-43 179.1 170 51.2
CDE05G0820 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 3.0e-43 179.1 164 53.0
FAN15G3577 Fragaria x ananassa HOM05D007618 ORTHO05D009606 3.9e-43 178.7 157 54.8
QL11p055874 Quercus lobata HOM05D007618 ORTHO05D009606 5.0e-43 178.3 158 52.5
FAN27G0591 Fragaria x ananassa HOM05D007618 ORTHO05D009606 3.3e-42 175.6 158 53.8
Gohir.A10G000200 Gossypium hirsutum HOM05D002478 ORTHO05D003331 5.6e-42 174.9 182 48.4
AUR62011704 Chenopodium quinoa HOM05D007618 ORTHO05D009606 1.2e-41 173.7 172 50.0
MBI08_g32524_MAGBIO Magnolia biondii HOM05D007618 ORTHO05D009606 2.6e-39 166.0 154 51.3
Nitab4.5_0000783g0170 Nicotiana tabacum HOM05D007618 ORTHO05D009606 2.6e-39 166.0 157 51.0
Lsat_1_v5_gn_8_120421 Lactuca sativa HOM05D007618 ORTHO05D009606 1.3e-38 163.7 166 48.2
SMO367G1105 Selaginella moellendorffii HOM05D007618 ORTHO05D009606 2.2e-38 162.9 168 52.4
arahy.Tifrunner.gnm1.ann1.ZSY7EJ Arachis hypogaea HOM05D007618 ORTHO05D009606 6.4e-38 161.4 158 51.3
Cfa005346 Carpinus fangiana HOM05D007618 ORTHO05D009606 4.6e-36 155.2 146 50.7
SEGI_37348 Sequoiadendron giganteum HOM05D007618 ORTHO05D009606 8.6e-35 151.0 166 48.2
Peaxi162Scf00362g00251 Petunia axillaris HOM05D007618 ORTHO05D009606 5.6e-34 148.3 149 49.7
Sc18g0005980 Simmondsia chinensis HOM05D007618 ORTHO05D009606 7.3e-34 147.9 146 50.7
Glyma.04G001200 Glycine max HOM05D007618 ORTHO05D009606 1.6e-33 146.7 118 57.6
Nitab4.5_0011212g0030 Nicotiana tabacum HOM05D007618 ORTHO05D009606 1.6e-33 146.7 163 45.4
DCAR_022841 Daucus carota HOM05D007618 ORTHO05D009606 8.1e-33 144.4 159 43.4
vmacro02327 Vaccinium macrocarpon HOM05D007618 ORTHO05D009606 1.4e-32 143.7 206 38.8
Actinidia20565 Actinidia chinensis HOM05D007618 ORTHO05D009606 5.2e-32 141.7 133 51.9
VMungo1309G2136 Vigna mungo HOM05D007618 ORTHO05D009606 5.2e-32 141.7 134 50.7
Zm00001eb002550 Zea mays HOM05D007618 ORTHO05D009606 3.4e-31 139.0 133 51.1
CBR_g37948 Chara braunii HOM05D007618 ORTHO05D009606 5.8e-31 138.3 170 40.0
arahy.Tifrunner.gnm1.ann1.DQ7S7B Arachis hypogaea HOM05D007618 ORTHO05D009606 9.9e-31 137.5 116 57.8
QL11p055571 Quercus lobata HOM05D007618 ORTHO05D009606 3.8e-30 135.6 133 48.1
arahy.Tifrunner.gnm1.ann1.U2J3P2 Arachis hypogaea HOM05D007618 ORTHO05D009606 1.1e-29 134.0 144 46.5
CBR_g30676 Chara braunii HOM05D007618 ORTHO05D009606 1.2e-28 130.6 162 39.5
Cre03.g200050 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 2.3e-27 126.3 163 41.1
Cre03.g200000 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 1.2e-23 114.0 168 35.7
Psat5g000560 Pisum sativum HOM05D007618 ORTHO05D009606 7.6e-23 111.3 158 37.3
TPR.G38509 Trifolium pratense HOM05D007618 ORTHO05D009606 3.8e-22 109.0 71 66.2
Cre12.g506850 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 4.9e-22 108.6 166 37.3
Atru.chr5.3531 Acer truncatum HOM05D007618 ORTHO05D009606 4.2e-21 105.5 96 54.2
ECA233G1377 Erigeron canadensis HOM05D007618 ORTHO05D009606 2.7e-20 102.8 107 50.5
Rhsim11G0196900 Rhododendron simsii HOM05D007618 ORTHO05D009606 7.8e-20 101.3 109 47.7
MCO11G779 Micromonas commoda HOM05D007618 ORTHO05D009606 1.0e-19 100.9 162 35.8
Nn1g00573 Nelumbo nucifera HOM05D007618 ORTHO05D009606 2.5e-18 96.3 128 41.4
PGSC0003DMG401014675 Solanum tuberosum HOM05D007618 ORTHO05D009606 4.3e-18 95.5 119 42.9
FAN24G0716 Fragaria x ananassa HOM05D007618 ORTHO05D009606 5.8e-15 85.1 52 69.2
Oeu006123.1 Olea europaea HOM05D007618 ORTHO05D009606 7.6e-15 84.7 57 61.4
ECA233G4785 Erigeron canadensis HOM05D007618 ORTHO05D009606 2.9e-14 82.8 58 60.3
TPR.G29338 Trifolium pratense HOM05D007618 ORTHO05D009606 6.4e-14 81.6 87 48.3
arahy.Tifrunner.gnm1.ann1.0TM8HZ Arachis hypogaea HOM05D007618 ORTHO05D009606 1.1e-08 64.3 64 48.4
Actinidia18005 Actinidia chinensis HOM05D007618 ORTHO05D009606 6.9e-08 61.6 64 43.8
Atru.chr5.3316 Acer truncatum HOM05D000282 ORTHO05D000272 9.0e-08 61.2 62 45.2
Psat5g000680 Pisum sativum HOM05D007618 ORTHO05D009606 1.5e-07 60.5 103 36.9
Atru.chr8.2195 Acer truncatum HOM05D000282 ORTHO05D009606 5.8e-07 58.5 55 49.1
CDE05G1760 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 9.9e-07 57.8 56 46.4
Carub.0006s3261 Capsella rubella HOM05D000059 ORTHO05D000128 3.8e-06 55.8 139 28.1
THA.LOC104799135 Tarenaya hassleriana HOM05D000059 ORTHO05D000128 4.9e-06 55.5 139 27.3
Aa31LG1G8840 Aethionema arabicum HOM05D000059 ORTHO05D000128 8.4e-06 54.7 139 27.3


User provided reference genes

Program Settings