Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.4e-187 659.4 334 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.5e-99 367.1 335 57.9
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.2e-93 347.4 329 53.8
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 3.4e-88 329.3 310 53.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 9.2e-86 321.2 350 50.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.3e-84 316.6 331 48.3
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.3e-83 312.8 325 50.8
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.3e-83 312.8 335 49.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-82 310.5 322 50.6
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-82 310.5 322 50.6
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.8e-82 309.7 320 50.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-81 306.2 333 47.7
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 5.2e-81 305.4 318 49.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 6.8e-81 305.1 314 49.7
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 8.9e-81 304.7 347 46.4
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 8.9e-81 304.7 335 50.4
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.5e-80 303.9 316 50.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.5e-80 303.9 342 48.2
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-80 303.9 339 47.2
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.5e-80 303.9 314 51.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.5e-80 303.9 345 45.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.0e-80 303.5 326 48.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.6e-80 303.1 322 51.2
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.4e-80 302.8 351 48.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.4e-80 302.4 346 48.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 5.7e-80 302.0 324 49.4
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.5e-80 301.6 324 49.7
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 9.8e-80 301.2 338 47.6
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.8e-80 301.2 338 47.6
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.8e-80 301.2 338 47.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 9.8e-80 301.2 341 48.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 9.8e-80 301.2 345 45.2
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.7e-79 300.4 341 48.4
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.7e-79 299.3 348 48.0
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 4.9e-79 298.9 331 45.6
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 4.9e-79 298.9 331 45.6
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.9e-79 298.9 325 48.3
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 6.4e-79 298.5 331 45.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.4e-79 298.5 338 47.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 6.4e-79 298.5 318 49.4
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 8.3e-79 298.1 335 45.7
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 8.3e-79 298.1 324 49.7
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.3e-79 298.1 338 46.4
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.4e-78 297.4 337 46.9
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.4e-78 296.6 319 50.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.4e-78 296.6 337 46.9
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.4e-78 296.6 326 47.9
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.4e-78 296.6 369 44.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.2e-78 296.2 324 50.0
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 4.1e-78 295.8 323 48.9
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 4.1e-78 295.8 315 50.5
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 7.0e-78 295.0 319 50.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 7.0e-78 295.0 319 50.2
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 9.2e-78 294.7 319 49.2
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 9.2e-78 294.7 319 49.2
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 9.2e-78 294.7 344 46.5
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 9.2e-78 294.7 350 46.3
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.2e-77 294.3 318 50.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.2e-77 294.3 374 45.5
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.6e-77 293.9 321 48.6
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.0e-77 293.5 315 47.9
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.0e-77 293.5 321 48.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-77 293.1 324 49.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-77 293.1 324 49.4
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.7e-77 293.1 345 45.5
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 5.9e-77 292.0 348 47.1
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.3e-76 290.8 329 45.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.7e-76 290.4 322 48.4
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.7e-76 290.4 327 46.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.0e-76 289.7 321 48.3
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 3.0e-76 289.7 345 45.5
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.0e-76 289.7 345 44.6
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.0e-76 289.7 349 44.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 6.6e-76 288.5 345 45.8
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 6.6e-76 288.5 326 46.0
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.1e-75 287.7 350 46.0
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.1e-75 287.7 319 48.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.1e-75 287.7 331 47.1
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.1e-75 287.7 320 48.1
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.5e-75 287.3 351 43.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.9e-75 287.0 322 48.1
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.9e-75 287.0 321 48.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 2.5e-75 286.6 316 49.4
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.5e-75 286.6 349 45.8
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.3e-75 286.2 346 45.4
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.6e-74 283.9 338 47.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.1e-74 283.5 339 45.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.8e-74 283.1 326 44.8
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 3.6e-74 282.7 344 44.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.3e-73 280.0 325 44.9
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.5e-72 277.3 320 45.9
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.6e-72 276.6 276 53.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 5.8e-72 275.4 404 42.3
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.3e-71 274.2 370 44.3
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.9e-71 273.1 316 47.8
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.4e-70 270.8 319 47.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.4e-70 270.0 276 51.8
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.4e-70 270.0 328 46.3
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-68 264.6 275 49.8
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.3e-68 263.5 364 42.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 5.0e-68 262.3 319 46.1
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.1e-65 253.1 320 45.6
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.5e-59 234.2 319 42.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.2e-58 231.1 272 46.0
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-57 226.5 312 42.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.1e-49 201.4 264 45.1
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.9e-49 198.7 243 45.3
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 2.2e-47 193.7 254 44.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-44 183.7 215 46.5
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.5e-43 180.3 215 43.7
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-41 173.3 203 45.8
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.1e-38 162.2 150 52.0
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 6.7e-36 155.6 229 42.8
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 8.7e-36 155.2 221 38.9
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-32 144.4 119 58.0
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-32 144.4 119 58.0
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 5.8e-32 142.5 176 45.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 4.9e-31 139.4 135 52.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.9e-30 137.5 121 56.2
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 9.3e-30 135.2 126 53.2
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.2e-29 134.8 140 49.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.8e-28 131.0 120 54.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 3.0e-28 130.2 166 41.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.1e-27 128.3 157 43.9
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.8e-26 122.9 120 53.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-24 118.2 158 38.0
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.3e-23 114.8 108 53.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.9e-21 105.5 389 24.9
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.8e-20 104.4 267 28.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.1e-20 102.8 97 51.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-19 101.3 99 53.5
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.0e-16 90.9 147 34.7
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-14 83.2 95 41.1
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.1e-06 58.5 42 59.5
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.9e-06 57.8 112 33.0
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.4e-06 55.5 64 48.4


User provided reference genes

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