Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.8e-146 523.1 371 100.0
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.0e-85 321.2 329 72.9
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.6e-57 226.9 308 52.6
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 3.2e-55 219.9 306 57.5
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.2e-55 219.9 334 59.0
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.0e-54 215.7 311 51.8
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-53 214.2 308 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 3.9e-53 213.0 332 62.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 5.6e-52 209.1 310 51.6
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.2e-49 201.4 308 49.4
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 7.6e-49 198.7 342 49.7
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.2e-48 197.2 308 52.9
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.2e-48 197.2 308 50.0
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.2e-48 197.2 327 49.2
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 3.8e-48 196.4 308 51.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.4e-47 193.7 306 51.6
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.2e-47 193.4 313 50.8
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 5.5e-47 192.6 293 57.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 7.1e-47 192.2 313 50.5
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.6e-46 191.0 342 49.1
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.7e-46 190.3 335 45.7
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 3.5e-46 189.9 308 48.1
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.6e-46 189.5 312 47.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 4.6e-46 189.5 345 56.5
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.8e-45 187.6 312 56.7
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 3.0e-45 186.8 308 46.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 5.1e-45 186.0 308 49.4
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 6.7e-45 185.7 327 44.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.5e-44 184.5 331 47.7
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.9e-44 184.1 311 48.9
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.3e-44 183.3 332 47.0
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.3e-44 183.3 332 47.0
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.3e-44 183.3 319 48.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 7.4e-44 182.2 332 49.1
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 9.6e-44 181.8 308 47.7
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 9.6e-44 181.8 310 48.7
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 9.6e-44 181.8 310 48.7
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.6e-44 181.8 307 59.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.1e-43 180.6 373 43.4
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.1e-42 178.3 308 45.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.1e-42 178.3 308 48.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.1e-42 178.3 322 58.4
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.1e-42 178.3 333 47.1
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-42 177.9 308 47.1
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.4e-42 177.9 338 46.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.0e-42 176.4 333 44.7
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 6.9e-42 175.6 333 44.4
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 3.4e-41 173.3 306 58.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 4.5e-41 172.9 331 44.7
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 4.5e-41 172.9 333 48.0
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 5.8e-41 172.6 333 44.1
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.0e-40 171.8 333 43.8
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.7e-40 171.0 331 44.4
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-40 170.6 333 43.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.2e-40 170.6 331 43.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 6.5e-40 169.1 308 47.7
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 8.4e-40 168.7 310 54.8
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.1e-39 168.3 362 36.5
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.4e-39 167.9 326 47.2
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.2e-39 166.8 308 48.1
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.2e-39 166.4 326 44.8
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.5e-39 166.0 308 45.5
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.2e-38 164.9 312 44.6
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.2e-38 164.9 295 56.9
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.6e-38 164.5 306 47.4
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-38 163.3 333 42.9
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-38 163.3 333 42.9
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.6e-38 162.9 331 42.9
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 4.6e-38 162.9 308 45.1
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 6.0e-38 162.5 300 45.3
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.0e-37 161.8 311 47.6
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.8e-37 161.0 330 44.5
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.3e-37 160.6 305 47.2
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 6.7e-37 159.1 311 47.3
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 6.7e-37 159.1 309 47.2
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-36 157.9 330 44.2
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-36 157.9 330 44.2
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.9e-36 157.5 347 43.2
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.3e-36 156.8 307 45.3
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.3e-36 156.4 330 43.6
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.3e-36 156.4 333 43.5
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 9.6e-36 155.2 306 47.4
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 9.6e-36 155.2 307 46.3
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 9.6e-36 155.2 308 45.5
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 9.6e-36 155.2 326 43.9
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-35 154.8 337 44.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 2.8e-35 153.7 308 44.2
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-34 151.8 308 44.5
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-34 151.4 211 41.2
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.8e-34 151.0 308 45.1
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.4e-34 150.6 329 44.1
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.2e-33 148.3 317 44.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-33 148.3 310 44.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.0e-33 147.5 305 45.6
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-33 147.1 330 42.4
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.6e-33 147.1 308 44.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 7.6e-33 145.6 330 43.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.0e-32 145.2 331 44.7
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.0e-32 145.2 331 42.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.0e-32 145.2 322 43.5
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.3e-32 144.8 283 57.2
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.3e-32 144.8 330 43.3
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.3e-32 144.8 328 43.9
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-31 141.4 308 42.9
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.4e-31 141.4 321 43.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.4e-31 141.4 307 44.6
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 2.5e-31 140.6 313 47.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.2e-31 140.2 308 42.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.2e-31 140.2 321 42.7
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-31 139.8 308 43.2
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-30 137.9 226 38.5
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.1e-30 137.5 288 45.1
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 7.9e-30 135.6 246 39.4
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 7.9e-30 135.6 333 42.3
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-28 131.0 211 39.3
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.9e-28 131.0 309 43.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 8.2e-27 125.6 283 45.9
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.4e-26 124.0 114 56.1
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 5.3e-26 122.9 341 40.5
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.3e-26 122.9 115 54.8
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 6.9e-26 122.5 284 46.5
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 9.1e-26 122.1 177 38.4
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 9.1e-26 122.1 308 40.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.5e-25 121.3 297 41.1
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.5e-25 121.3 115 57.4
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.4e-25 120.2 328 40.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.4e-25 120.2 114 57.0
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-25 119.8 177 37.9
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 5.0e-24 116.3 114 56.1
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.2e-23 113.6 285 43.5
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-21 107.5 179 36.9
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-19 101.7 104 51.0
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-19 101.7 104 51.0
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-19 100.1 211 37.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-19 100.1 104 50.0
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-18 98.6 161 37.3
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.3e-18 96.3 104 51.0
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 5.3e-18 96.3 104 51.0
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 6.5e-16 89.4 213 30.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.2e-15 87.0 146 34.9
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-15 86.7 179 34.1
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.2e-13 79.7 79 57.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-12 77.8 79 55.7
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-12 77.8 79 55.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.3e-12 77.0 114 39.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.4e-12 75.9 150 32.7
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-11 75.1 57 61.4
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.4e-10 70.9 177 48.0
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-10 70.5 179 30.7
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.0e-10 69.3 72 54.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-09 68.2 72 54.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.8e-08 63.5 67 55.2
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 6.5e-08 62.8 151 30.5
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.5e-07 60.8 113 37.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 3.2e-07 60.5 100 39.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 5.5e-07 59.7 145 36.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.2e-07 59.3 220 45.9
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-06 56.2 49 49.0
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 6.1e-06 56.2 49 49.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 6.1e-06 56.2 47 66.0
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 8.0e-06 55.8 212 42.5


User provided reference genes

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