Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.8e-277 958.7 522 100.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.3e-266 920.6 466 97.0
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.3e-266 920.6 466 97.0
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.3e-239 831.2 419 96.4
Pp3c26_6220 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-133 481.1 362 70.2
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.0e-64 248.8 459 36.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.7e-49 201.4 429 32.4
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.5e-46 189.5 310 41.3
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 8.5e-46 189.1 364 35.4
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.5e-46 189.1 478 31.2
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 5.5e-45 186.4 443 30.9
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.5e-45 186.4 474 31.0
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.5e-45 186.4 474 31.0
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 9.4e-45 185.7 475 31.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 9.4e-45 185.7 371 34.0
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 9.4e-45 185.7 381 32.5
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 1.2e-44 185.3 441 31.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.6e-44 184.9 386 33.4
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.6e-44 184.9 463 30.7
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 2.1e-44 184.5 459 29.8
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 2.7e-44 184.1 467 31.0
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.7e-44 184.1 371 33.7
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 3.6e-44 183.7 395 33.7
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 3.6e-44 183.7 466 30.9
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 3.6e-44 183.7 378 33.6
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.7e-44 183.3 475 30.3
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 4.7e-44 183.3 382 33.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 6.1e-44 183.0 467 30.0
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 7.9e-44 182.6 462 30.3
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.0e-43 182.2 377 34.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.0e-43 182.2 482 30.7
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 1.8e-43 181.4 371 32.6
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.8e-43 181.4 376 34.8
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 2.3e-43 181.0 475 30.3
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 2.3e-43 181.0 386 33.2
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 2.3e-43 181.0 386 33.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 3.0e-43 180.6 375 33.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 3.0e-43 180.6 448 31.5
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 3.9e-43 180.3 401 33.4
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 5.1e-43 179.9 401 33.4
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 6.7e-43 179.5 450 31.8
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 6.7e-43 179.5 481 29.9
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 6.7e-43 179.5 374 32.9
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 8.8e-43 179.1 445 31.0
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.5e-42 178.3 371 34.0
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 1.5e-42 178.3 454 30.2
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.0e-42 177.9 461 30.8
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.0e-42 177.9 486 30.9
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 2.0e-42 177.9 452 32.7
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 2.0e-42 177.9 446 31.6
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 2.0e-42 177.9 379 34.0
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 4.4e-42 176.8 461 30.6
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 5.7e-42 176.4 376 31.6
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 5.7e-42 176.4 453 30.7
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 5.7e-42 176.4 461 28.6
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 9.7e-42 175.6 471 29.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 9.7e-42 175.6 472 30.9
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 9.7e-42 175.6 376 33.5
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 1.3e-41 175.3 375 32.0
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.7e-41 174.9 473 29.2
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.7e-41 174.9 473 29.2
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.2e-41 174.5 379 33.5
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 3.7e-41 173.7 382 31.9
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.3e-41 172.9 473 28.8
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 6.3e-41 172.9 375 32.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 6.3e-41 172.9 387 32.0
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 6.3e-41 172.9 374 32.1
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 6.3e-41 172.9 372 33.3
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.4e-40 171.8 373 32.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.4e-40 171.8 392 32.7
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 3.1e-40 170.6 375 33.9
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 4.1e-40 170.2 390 31.5
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 4.1e-40 170.2 375 32.5
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 5.3e-40 169.9 374 32.9
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.2e-39 168.7 451 30.4
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 1.2e-39 168.7 376 34.0
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 1.2e-39 168.7 374 33.4
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 1.2e-39 168.7 374 32.9
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.5e-39 168.3 385 31.2
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.5e-39 168.3 377 31.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 1.5e-39 168.3 388 32.2
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 2.6e-39 167.5 470 28.5
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 2.6e-39 167.5 448 30.4
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 2.6e-39 167.5 388 32.2
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 2.6e-39 167.5 387 30.7
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 2.6e-39 167.5 372 32.8
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 3.5e-39 167.2 370 33.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.5e-39 166.8 375 32.8
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 5.9e-39 166.4 467 29.8
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 7.7e-39 166.0 391 31.7
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 7.7e-39 166.0 375 32.5
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.3e-38 165.2 375 32.5
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-38 165.2 376 32.4
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.7e-38 164.9 381 31.5
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 2.2e-38 164.5 327 33.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 2.2e-38 164.5 374 33.4
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.9e-38 164.1 375 30.7
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.9e-38 164.1 404 31.4
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.9e-38 164.1 376 32.2
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 3.8e-38 163.7 366 32.0
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.5e-38 162.9 474 29.7
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.5e-38 162.5 376 31.9
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.1e-37 162.2 387 31.5
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.5e-37 161.0 380 32.6
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 7.2e-37 159.5 441 29.5
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.6e-36 158.3 326 32.2
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 3.6e-36 157.1 387 30.0
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.5e-34 151.8 382 30.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.7e-34 149.8 379 30.3
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.8e-33 146.7 362 31.2
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.1e-32 145.6 473 27.9
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.8e-32 144.8 351 33.6
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 3.1e-32 144.1 400 29.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.5e-29 133.3 373 29.2
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.8e-27 126.3 401 28.4
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.1e-24 115.9 458 26.2
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 9.1e-16 89.4 238 30.3
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.3e-14 84.7 107 42.1
Pp3c13_23360 Physcomitrium patens HOM05D020320 ORTHO05D006869 8.6e-14 82.8 65 61.5
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.0e-11 73.9 294 24.5
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.7e-10 70.1 84 45.2
SMO116G0125 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 2.2e-09 68.2 293 24.9
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.9e-09 67.8 151 34.4
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 5.4e-08 63.5 143 29.4
Cre16.g691350 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.9e-06 57.8 289 24.6


User provided reference genes

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