Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 5543.0 2977 100.0
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 4395.1 2980 79.2
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 0.0e+00 2765.3 2928 52.5
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 0.0e+00 2718.0 2410 57.8
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 2065.4 2294 47.3
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 2039.6 2282 47.6
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 0.0e+00 1718.4 2395 41.0
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 0.0e+00 1321.6 2323 35.6
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 0.0e+00 1309.3 1388 49.1
SEGI_06827 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 1.1e-203 716.1 846 46.2
SEGI_34609 Sequoiadendron giganteum HOM05D011343 ORTHO05D384342 2.9e-90 339.3 286 58.0
SEGI_22943 Sequoiadendron giganteum HOM05D011343 ORTHO05D385027 1.4e-23 117.9 112 51.8
Pp3c5_1390 Physcomitrium patens HOM05D011343 ORTHO05D308813 1.0e-18 101.7 65 78.5
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 1.1e-17 98.2 1198 22.0
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 1.5e-17 97.8 679 23.1
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 2.5e-17 97.1 830 21.3
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.5e-17 97.1 1557 20.4
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 3.3e-17 96.7 1229 22.1
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.1e-16 94.0 1185 22.5
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 4.7e-16 92.8 560 22.7
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 6.2e-16 92.4 262 27.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 6.2e-16 92.4 630 25.1
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 8.0e-16 92.0 601 22.8
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.1e-15 91.7 237 29.1
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.1e-15 90.1 217 28.6
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 4.0e-15 89.7 619 22.6
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 6.8e-15 89.0 243 29.2
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 6.8e-15 89.0 231 26.0
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 8.9e-15 88.6 218 28.4
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 8.9e-15 88.6 211 28.9
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.2e-14 88.2 219 28.8
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.2e-14 88.2 211 28.4
SEGI_21654 Sequoiadendron giganteum HOM05D011343 ORTHO05D006175 1.2e-14 88.2 108 41.7
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 1.5e-14 87.8 266 28.9
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 1.5e-14 87.8 211 28.9
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.5e-14 87.8 217 28.1
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 2.0e-14 87.4 250 28.4
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 2.0e-14 87.4 221 30.3
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 2.0e-14 87.4 212 29.2
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 2.0e-14 87.4 221 30.3
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.6e-14 87.0 217 29.5
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 2.6e-14 87.0 227 29.5
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 2.6e-14 87.0 210 29.0
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 2.6e-14 87.0 238 28.2
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 2.6e-14 87.0 233 28.3
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 2.6e-14 87.0 211 28.9
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.6e-14 87.0 221 30.3
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 2.6e-14 87.0 211 28.4
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 2.6e-14 87.0 221 29.4
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 2.6e-14 87.0 221 29.9
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 2.6e-14 87.0 215 29.3
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 2.6e-14 87.0 238 28.6
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 2.6e-14 87.0 211 28.4
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 3.4e-14 86.7 217 30.4
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 3.4e-14 86.7 211 28.4
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 3.4e-14 86.7 217 30.4
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 3.4e-14 86.7 221 30.3
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.4e-14 86.7 221 30.3
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.4e-14 86.7 221 30.3
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 3.4e-14 86.7 221 29.4
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 3.4e-14 86.7 233 28.3
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 3.4e-14 86.7 217 30.0
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 4.4e-14 86.3 217 30.0
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 4.4e-14 86.3 215 29.3
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 4.4e-14 86.3 228 29.4
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 4.4e-14 86.3 211 28.4
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 4.4e-14 86.3 217 29.0
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 4.4e-14 86.3 211 28.4
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 4.4e-14 86.3 253 28.5
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 4.4e-14 86.3 221 29.9
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 5.8e-14 85.9 257 27.2
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 5.8e-14 85.9 221 29.9
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 5.8e-14 85.9 221 30.3
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 5.8e-14 85.9 212 29.2
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 5.8e-14 85.9 221 29.4
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 7.5e-14 85.5 211 28.0
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 7.5e-14 85.5 211 28.0
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 7.5e-14 85.5 217 29.5
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 7.5e-14 85.5 217 29.0
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 9.8e-14 85.1 217 30.0
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 9.8e-14 85.1 211 29.4
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 9.8e-14 85.1 243 28.8
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 9.8e-14 85.1 211 28.4
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 9.8e-14 85.1 221 29.4
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.4
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.3e-13 84.7 212 28.3
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.9
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.9
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.4
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.0
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.3e-13 84.7 221 29.9
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.7e-13 84.3 217 29.0
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 1.7e-13 84.3 217 29.5
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 1.7e-13 84.3 217 29.5
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.7e-13 84.3 217 29.5
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 1.7e-13 84.3 217 28.1
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 2.2e-13 84.0 216 29.2
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 2.2e-13 84.0 221 29.9
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 2.2e-13 84.0 211 28.0
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 2.2e-13 84.0 228 28.9
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 2.9e-13 83.6 217 28.6
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 2.9e-13 83.6 218 28.0
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 3.7e-13 83.2 238 26.9
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 4.9e-13 82.8 221 29.4
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 4.9e-13 82.8 221 29.0
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 4.9e-13 82.8 221 29.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 8.3e-13 82.0 217 28.6
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 8.3e-13 82.0 216 28.2
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 1.1e-12 81.6 221 29.4
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 1.1e-12 81.6 217 28.6
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.1e-12 81.6 237 27.4
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.4e-12 81.3 221 29.4
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.4e-12 81.3 221 28.5
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.4e-12 81.3 221 28.5
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 1.9e-12 80.9 221 29.4
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 2.4e-12 80.5 221 28.5
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 2.4e-12 80.5 221 29.0
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 3.2e-12 80.1 206 29.1
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 3.2e-12 80.1 212 29.2
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 3.2e-12 80.1 221 29.0
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 3.2e-12 80.1 346 24.0
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.1e-12 79.7 221 29.0
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 7.1e-12 79.0 221 29.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 9.2e-12 78.6 221 29.0
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 1.2e-11 78.2 211 27.0
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 1.2e-11 78.2 221 28.5
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.0e-10 75.1 145 32.4
SEGI_11466 Sequoiadendron giganteum HOM05D011343 ORTHO05D386210 1.0e-10 75.1 74 45.9
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 1.3e-10 74.7 212 27.8
SEGI_06731 Sequoiadendron giganteum HOM05D011343 ORTHO05D385284 3.0e-10 73.6 109 45.0
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.5e-09 71.2 187 27.8
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.9e-09 70.9 194 28.4
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 1.2e-08 68.2 255 27.1
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.2e-06 61.6 119 29.4


User provided reference genes

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