Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.7e-202 709.1 363 100.0
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.1e-89 334.3 365 52.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.3e-85 320.9 354 49.4
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 6.9e-71 271.9 343 44.9
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 9.0e-71 271.6 348 43.4
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.0e-69 268.1 336 43.2
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 2.2e-69 266.9 337 43.6
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 2.2e-69 266.9 337 43.9
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.9e-69 266.5 336 44.0
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 6.5e-69 265.4 338 43.8
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 2.5e-68 263.5 326 45.1
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.2e-68 262.7 327 44.6
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 7.2e-68 261.9 358 41.6
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.7e-67 260.0 334 43.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.6e-67 259.6 321 44.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.6e-67 259.6 358 41.9
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 7.9e-67 258.5 331 42.3
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.0e-66 258.1 330 43.9
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 3.0e-66 256.5 322 43.2
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 5.1e-66 255.8 335 44.2
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 6.7e-66 255.4 336 43.2
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.8e-66 255.0 363 41.3
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.5e-65 254.2 333 44.1
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.5e-65 254.2 330 43.9
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 2.0e-65 253.8 347 41.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.5e-65 253.4 345 43.5
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.3e-65 253.1 347 41.2
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 4.3e-65 252.7 359 41.5
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 5.7e-65 252.3 356 42.1
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 5.7e-65 252.3 331 42.6
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 7.4e-65 251.9 327 42.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 9.7e-65 251.5 337 43.3
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.8e-64 250.0 337 42.1
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 3.7e-64 249.6 326 42.9
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.8e-64 249.2 348 41.1
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.3e-64 248.8 345 41.4
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.1e-63 248.1 346 40.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.8e-63 247.3 326 42.9
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.4e-63 246.9 339 41.6
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 4.1e-63 246.1 325 42.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.1e-63 246.1 325 42.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.1e-63 246.1 325 42.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.3e-63 245.7 327 42.2
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 5.3e-63 245.7 327 42.2
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 9.1e-63 245.0 307 44.0
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 9.1e-63 245.0 340 41.2
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.2e-62 244.6 326 40.8
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.5e-62 244.2 351 39.9
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.0e-62 243.8 338 41.4
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.4e-62 243.0 325 42.2
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 4.5e-62 242.7 339 40.7
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 4.5e-62 242.7 323 42.1
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 5.9e-62 242.3 331 41.4
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.3e-61 241.1 329 41.6
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 2.9e-61 240.0 305 43.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 5.0e-61 239.2 340 40.6
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 6.5e-61 238.8 290 45.5
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 8.5e-61 238.4 357 40.6
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.4e-60 237.7 332 42.5
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 4.2e-60 236.1 342 41.2
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 5.5e-60 235.7 343 41.4
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 7.2e-60 235.3 366 38.0
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 7.2e-60 235.3 329 41.6
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 9.4e-60 235.0 349 40.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 9.4e-60 235.0 341 40.5
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.2e-59 234.6 345 40.6
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.2e-59 234.6 330 41.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.6e-59 234.2 336 39.9
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.6e-59 233.0 356 40.2
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 6.1e-59 232.3 348 38.8
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 7.9e-59 231.9 349 39.5
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 8.8e-58 228.4 337 40.1
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.5e-57 227.6 334 39.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.0e-57 227.3 335 41.5
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.0e-57 227.3 327 41.0
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.6e-57 226.9 355 39.4
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.6e-57 226.9 296 42.9
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 7.4e-57 225.3 322 40.7
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 9.7e-57 224.9 374 37.2
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.3e-56 224.6 345 38.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.2e-56 223.8 327 39.8
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 2.2e-56 223.8 410 35.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.8e-56 222.6 303 42.2
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.3e-56 222.2 343 39.4
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.1e-55 221.5 330 39.7
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.8e-55 220.7 321 39.6
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.4e-55 220.3 293 44.4
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 4.1e-55 219.5 327 39.4
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 5.3e-55 219.2 325 41.2
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 9.1e-55 218.4 330 39.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 9.1e-55 218.4 326 38.3
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 2.6e-54 216.9 345 38.6
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 3.8e-53 213.0 348 38.2
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 8.0e-51 205.3 340 36.5
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.0e-50 203.4 338 36.7
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 8.8e-50 201.8 265 43.4
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.1e-49 201.4 309 38.2
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.6e-49 200.3 268 41.4
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.3e-48 198.0 333 37.5
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 2.8e-48 196.8 198 54.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.7e-48 196.4 294 40.1
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 6.3e-48 195.7 330 37.6
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-47 194.5 286 40.6
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 3.1e-47 193.4 359 35.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 9.1e-47 191.8 344 36.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 8.5e-45 185.3 361 34.6
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 8.5e-45 185.3 243 44.9
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 7.2e-44 182.2 421 32.1
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.1e-43 180.6 398 32.2
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 8.8e-42 175.3 379 33.0
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 2.0e-41 174.1 201 46.8
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 4.4e-41 172.9 341 34.0
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 9.7e-41 171.8 235 43.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.8e-40 169.5 408 31.4
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.4e-39 167.9 245 40.8
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 3.1e-39 166.8 347 35.4
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 4.1e-39 166.4 227 39.2
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.3e-39 166.0 227 40.1
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 5.9e-38 162.5 324 33.6
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 7.7e-38 162.2 310 34.2
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.5e-36 157.1 231 39.4
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 5.5e-36 156.0 228 36.0
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.0e-34 150.2 188 44.1
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 5.5e-28 129.4 186 34.9
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.0e-26 125.2 142 50.7
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 5.2e-26 122.9 212 32.5
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.5e-25 121.3 210 33.3
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 8.6e-21 105.5 217 34.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 8.6e-21 105.5 169 41.4
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.2e-19 101.7 153 39.2
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.6e-19 100.1 98 55.1
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.4e-17 93.6 116 43.1
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.5e-17 92.4 95 51.6
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.4e-15 87.4 115 36.5
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.0e-14 84.3 115 47.0
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 6.2e-11 72.8 74 51.4
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 4.4e-09 66.6 101 41.6
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.3e-08 65.1 140 33.6
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.6e-06 58.2 51 58.8


User provided reference genes

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