Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 0.0e+00 1170.2 589 100.0
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 7.0e-214 747.7 587 65.8
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.4e-124 451.1 557 46.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 2.5e-123 446.8 561 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.8e-114 416.0 584 42.8
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.1e-113 412.9 558 44.8
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 5.3e-113 412.5 553 43.4
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.2e-112 411.4 571 41.7
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.5e-112 411.0 561 44.2
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 2.6e-112 410.2 552 42.0
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 8.5e-111 405.2 552 41.1
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.4e-110 404.4 552 42.6
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.4e-110 404.4 572 41.4
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.5e-110 403.7 547 41.9
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 4.2e-110 402.9 550 42.4
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 5.5e-110 402.5 551 42.5
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 5.5e-110 402.5 547 41.7
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 7.2e-110 402.1 551 42.6
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.6e-109 401.0 549 41.9
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.6e-109 401.0 557 41.3
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.1e-109 400.6 564 41.8
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 3.6e-109 399.8 545 42.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.7e-109 399.4 562 41.8
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.7e-109 399.4 557 40.9
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 6.1e-109 399.1 555 41.3
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 8.0e-109 398.7 562 41.3
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.4e-108 397.9 553 41.4
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.8e-108 397.5 551 41.9
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.8e-108 397.5 551 41.9
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 1.8e-108 397.5 553 41.0
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.3e-108 397.1 569 40.4
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 3.0e-108 396.7 565 41.4
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 6.7e-108 395.6 561 41.5
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 8.8e-108 395.2 547 41.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 8.8e-108 395.2 556 41.4
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.1e-107 394.8 581 41.3
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.1e-107 394.8 562 41.8
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.5e-107 394.4 550 41.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.0e-107 394.0 580 40.9
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.6e-107 393.7 554 40.8
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 2.6e-107 393.7 547 40.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.3e-107 393.3 557 41.1
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 4.4e-107 392.9 576 41.5
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 4.4e-107 392.9 549 42.4
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 7.4e-107 392.1 553 41.4
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 7.4e-107 392.1 553 41.4
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 9.7e-107 391.7 552 40.2
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 9.7e-107 391.7 595 40.0
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.7e-107 391.7 551 40.3
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.3e-106 391.3 554 40.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.3e-106 391.3 547 42.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.3e-106 391.3 550 42.0
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.7e-106 391.0 549 40.1
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.7e-106 391.0 551 41.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.7e-106 391.0 553 41.8
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.7e-106 391.0 566 40.8
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.2e-106 390.6 557 41.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.8e-106 390.2 552 42.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 2.8e-106 390.2 553 41.0
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 3.7e-106 389.8 548 42.5
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.8e-106 389.4 555 40.9
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 6.3e-106 389.0 563 41.2
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 6.3e-106 389.0 551 40.7
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.2e-106 388.7 547 41.9
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 8.2e-106 388.7 553 40.9
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.1e-105 388.3 554 41.2
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.8e-105 387.5 556 42.8
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 2.4e-105 387.1 553 41.6
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 2.4e-105 387.1 552 40.6
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 2.4e-105 387.1 552 40.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.4e-105 387.1 591 40.4
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.4e-105 387.1 560 41.1
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.4e-105 387.1 556 42.1
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 3.1e-105 386.7 553 40.1
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 3.1e-105 386.7 553 41.4
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 4.1e-105 386.3 552 40.8
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 5.3e-105 386.0 563 40.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 7.0e-105 385.6 559 39.5
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 1.6e-104 384.4 552 41.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.6e-104 383.6 545 41.3
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.6e-104 383.6 552 41.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 3.5e-104 383.3 554 39.5
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 3.5e-104 383.3 557 40.0
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 1.0e-103 381.7 530 42.6
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.8e-103 379.8 580 39.1
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 9.4e-102 375.2 535 41.5
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 6.1e-101 372.5 556 40.6
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 6.1e-101 372.5 510 42.4
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.8e-100 370.9 582 39.3
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 2.3e-100 370.5 615 37.2
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.6e-99 367.1 555 38.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.3e-98 364.8 517 42.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 2.4e-97 360.5 584 38.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.1e-94 351.7 518 41.5
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 3.2e-94 350.1 551 39.6
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 5.2e-92 342.8 639 38.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 2.8e-90 337.0 549 37.0
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.8e-90 336.3 523 39.8
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 2.3e-87 327.4 603 36.8
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 2.5e-86 323.9 482 41.7
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.8e-84 315.8 451 42.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 8.9e-84 315.5 572 35.8
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 9.8e-83 312.0 549 35.7
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 4.1e-81 306.6 437 40.5
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.0e-77 292.4 438 38.8
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 7.0e-73 279.3 519 35.5
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 8.6e-55 219.2 382 38.5
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 6.2e-53 213.0 216 49.5
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.8e-52 211.5 553 29.7
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.8e-52 211.5 208 52.4
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.0e-52 210.3 563 30.6
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 3.8e-50 203.8 697 25.7
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 7.1e-49 199.5 195 51.3
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.6e-48 198.4 199 51.3
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 6.0e-48 196.4 328 39.3
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.4e-43 180.3 161 52.2
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.1e-41 172.9 169 51.5
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.5e-30 137.9 165 46.1
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.6e-30 136.0 349 32.4
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 9.6e-30 136.0 120 55.0
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 2.1e-29 134.8 805 21.6
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.0e-26 125.9 89 66.3
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 6.5e-26 123.2 129 49.6
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.3e-22 110.5 91 63.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 3.0e-15 87.8 60 68.3
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.6e-13 82.0 94 41.5
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.2e-13 79.7 141 36.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 6.9e-12 76.6 110 40.9
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.4e-11 74.3 113 32.7
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.7e-11 73.2 111 34.2
MCO14G031 Micromonas commoda HOM05D018879 ORTHO05D018932 5.0e-10 70.5 487 22.8
MCO14G228 Micromonas commoda HOM05D018879 ORTHO05D018932 5.0e-10 70.5 487 22.8
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 9.4e-09 66.2 53 64.2
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.0e-07 62.8 88 36.4
PRCOL_00002407 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.4e-07 62.4 167 29.3
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 5.1e-07 60.5 135 29.6


User provided reference genes

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