Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_5850 Physcomitrium patens HOM05D000425 ORTHO05D000373 2.0e-30 135.2 72 100.0
Pp3c9_20170 Physcomitrium patens HOM05D000425 ORTHO05D000373 2.0e-30 135.2 72 100.0
Pp3c10_6930 Physcomitrium patens HOM05D000425 ORTHO05D000373 1.6e-19 99.0 67 74.6
AagrBONN_evm.TU.Sc2ySwM_117.2234 Anthoceros agrestis HOM05D000425 ORTHO05D000373 2.9e-13 78.2 67 58.2
Mapoly0026s0021 Marchantia polymorpha HOM05D000425 ORTHO05D000373 5.5e-12 73.9 62 56.5
ATR0680G312 Amborella trichopoda HOM05D000425 ORTHO05D000373 3.3e-09 64.7 62 46.8
Dinv36404 Davidia involucrata HOM05D000425 ORTHO05D000373 3.3e-09 64.7 63 50.8
SMO165G0088 Selaginella moellendorffii HOM05D000425 ORTHO05D000373 5.7e-09 63.9 60 55.0
SMO334G0096 Selaginella moellendorffii HOM05D000425 ORTHO05D000373 7.4e-09 63.5 60 56.7
Zm00001eb087950 Zea mays HOM05D000425 ORTHO05D000373 7.4e-09 63.5 63 47.6
Solyc11g008440.3 Solanum lycopersicum HOM05D000425 ORTHO05D000373 9.7e-09 63.2 62 54.8
Sopen11g004230 Solanum pennellii HOM05D000425 ORTHO05D000373 9.7e-09 63.2 62 54.8
Actinidia32438 Actinidia chinensis HOM05D000425 ORTHO05D000373 2.2e-08 62.0 64 50.0
Aqoxy1G01173_Aqoxy1G01174 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 2.8e-08 61.6 64 54.7
Cc06_g02410 Coffea canephora HOM05D000425 ORTHO05D000373 2.8e-08 61.6 59 50.8
Lalb_Chr19g0129121 Lupinus albus HOM05D000425 ORTHO05D000373 2.8e-08 61.6 60 51.7
Oeu046635.3 Olea europaea HOM05D000425 ORTHO05D000373 2.8e-08 61.6 64 50.0
Os02g0101000 Oryza sativa ssp. japonica HOM05D000425 ORTHO05D000373 3.7e-08 61.2 64 48.4
CSS0030057 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 4.8e-08 60.8 60 50.0
Actinidia26712 Actinidia chinensis HOM05D000425 ORTHO05D000373 6.3e-08 60.5 59 47.5
CSS0006346 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 6.3e-08 60.5 64 46.9
CiPaw.01G269900 Carya illinoinensis HOM05D000425 ORTHO05D000373 6.3e-08 60.5 62 48.4
AUR62038484 Chenopodium quinoa HOM05D000425 ORTHO05D000373 6.3e-08 60.5 64 48.4
Lalb_Chr03g0036411 Lupinus albus HOM05D000425 ORTHO05D000373 6.3e-08 60.5 62 50.0
SEGI_28369 Sequoiadendron giganteum HOM05D000425 ORTHO05D000373 6.3e-08 60.5 64 50.0
THA.LOC104825222 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 6.3e-08 60.5 64 43.8
Carub.0005s2143 Capsella rubella HOM05D000425 ORTHO05D000373 8.2e-08 60.1 60 46.7
Lalb_Chr01g0010451 Lupinus albus HOM05D000425 ORTHO05D000373 8.2e-08 60.1 62 50.0
Lalb_Chr21g0313751 Lupinus albus HOM05D000425 ORTHO05D000373 8.2e-08 60.1 64 48.4
Peaxi162Scf00253g00417 Petunia axillaris HOM05D000425 ORTHO05D000373 8.2e-08 60.1 62 50.0
SGA_v2.0_scaffold2G01361 Striga asiatica HOM05D000425 ORTHO05D000373 8.2e-08 60.1 64 48.4
CARHR164780 Cardamine hirsuta HOM05D000425 ORTHO05D000373 1.1e-07 59.7 60 48.3
Glyma.10G208800 Glycine max HOM05D000425 ORTHO05D000373 1.1e-07 59.7 62 50.0
Lsat_1_v5_gn_8_20561 Lactuca sativa HOM05D000425 ORTHO05D000373 1.1e-07 59.7 63 52.4
Manes.10G049300 Manihot esculenta HOM05D000425 ORTHO05D000373 1.1e-07 59.7 60 53.3
arahy.Tifrunner.gnm1.ann1.N0MV1J Arachis hypogaea HOM05D000425 ORTHO05D000373 1.4e-07 59.3 64 50.0
CSS0032834 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 1.4e-07 59.3 59 47.5
CAN.G321.40 Capsicum annuum HOM05D000425 ORTHO05D000373 1.8e-07 58.9 62 51.6
CsaV3_5G036080 Cucumis sativus L. HOM05D000425 ORTHO05D000373 1.8e-07 58.9 64 50.0
Lj6g0013335 Lotus japonicus HOM05D000425 ORTHO05D000373 1.8e-07 58.9 60 53.3
Nn2g11557 Nelumbo nucifera HOM05D000425 ORTHO05D000373 1.8e-07 58.9 64 46.9
MELO3C012409.2 Cucumis melo HOM05D000425 ORTHO05D000373 2.4e-07 58.5 64 48.4
Lj2A18T49 Lonicera japonica HOM05D000425 ORTHO05D000373 2.4e-07 58.5 64 45.3
Lalb_Chr02g0152161 Lupinus albus HOM05D000425 ORTHO05D000373 2.4e-07 58.5 64 48.4
Oeu015082.1 Olea europaea HOM05D000425 ORTHO05D000373 2.4e-07 58.5 64 48.4
CAN.G779.2 Capsicum annuum HOM05D000425 ORTHO05D000373 3.1e-07 58.2 64 50.0
Sed0017499 Sechium edule HOM05D000425 ORTHO05D000373 3.1e-07 58.2 64 48.4
TWI38G1268 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 3.1e-07 58.2 62 50.0
Zm00001eb278120 Zea mays HOM05D000425 ORTHO05D000373 3.1e-07 58.2 64 46.9
A09p47760 Brassica napus HOM05D000425 ORTHO05D000373 4.1e-07 57.8 64 43.8
BraA09t40234Z Brassica rapa HOM05D000425 ORTHO05D000373 4.1e-07 57.8 64 43.8
CDE05G0235 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 4.1e-07 57.8 63 46.0
Oeu035819.2 Olea europaea HOM05D000425 ORTHO05D000373 4.1e-07 57.8 64 48.4
Manes.07G095400 Manihot esculenta HOM05D000425 ORTHO05D000373 5.3e-07 57.4 62 48.4
C08p29990 Brassica napus HOM05D000425 ORTHO05D000373 6.9e-07 57.0 60 46.7
Ca_10549_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 6.9e-07 57.0 64 45.3
Thhalv10010278m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 6.9e-07 57.0 60 45.0
FAN10G3551 Fragaria x ananassa HOM05D000425 ORTHO05D000373 6.9e-07 57.0 64 43.8
Lalb_Chr02g0156601 Lupinus albus HOM05D000425 ORTHO05D000373 6.9e-07 57.0 63 49.2
Phvul.007G256500 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 6.9e-07 57.0 63 50.8
SalBow4G1724 Salvia bowleyana HOM05D000425 ORTHO05D000373 6.9e-07 57.0 59 50.8
SalBow4G1926 Salvia bowleyana HOM05D000425 ORTHO05D000373 6.9e-07 57.0 59 50.8
VMungo0720G1160 Vigna mungo HOM05D000425 ORTHO05D000373 6.9e-07 57.0 63 50.8
BcaB01g00156 Brassica carinata HOM05D000425 ORTHO05D000373 9.1e-07 56.6 60 45.0
BcaC07g39779 Brassica carinata HOM05D000425 ORTHO05D000373 9.1e-07 56.6 60 45.0
BolC8t50608H Brassica oleracea HOM05D000425 ORTHO05D000373 9.1e-07 56.6 60 45.0
Lalb_Chr01g0022581 Lupinus albus HOM05D000425 ORTHO05D000373 9.1e-07 56.6 60 43.3
MD12G1144700 Malus domestica HOM05D000425 ORTHO05D000373 9.1e-07 56.6 59 42.4
Sed0015143 Sechium edule HOM05D000425 ORTHO05D000373 9.1e-07 56.6 61 49.2
ATR0559G141 Amborella trichopoda HOM05D000425 ORTHO05D000373 1.2e-06 56.2 70 42.9
ClCG05G021180 Citrullus lanatus HOM05D000425 ORTHO05D000373 1.2e-06 56.2 60 51.7
Migut.F01722 Erythranthe guttata HOM05D000425 ORTHO05D000373 1.2e-06 56.2 60 48.3
Thhalv10016467m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 1.2e-06 56.2 64 46.9
Glyma.18G154800 Glycine max HOM05D000425 ORTHO05D000373 1.2e-06 56.2 62 45.2
Lj1g0000007 Lotus japonicus HOM05D000425 ORTHO05D000373 1.2e-06 56.2 63 50.8
Phvul.007G097200 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 1.2e-06 56.2 62 45.2
Psat6g181960 Pisum sativum HOM05D000425 ORTHO05D000373 1.2e-06 56.2 64 46.9
Sp5g07590 Schrenkiella parvula HOM05D000425 ORTHO05D000373 1.2e-06 56.2 60 45.0
TPR.G1674 Trifolium pratense HOM05D000425 ORTHO05D000373 1.2e-06 56.2 59 47.5
arahy.Tifrunner.gnm1.ann1.JR6N4B Arachis hypogaea HOM05D000425 ORTHO05D000373 1.5e-06 55.8 56 48.2
CiPaw.10G040100 Carya illinoinensis HOM05D000425 ORTHO05D000373 1.5e-06 55.8 62 51.6
Ca_26015_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 1.5e-06 55.8 63 50.8
Eucgr.J01066 Eucalyptus grandis HOM05D000425 ORTHO05D000373 1.5e-06 55.8 60 48.3
FvH4_6g25440 Fragaria vesca HOM05D000425 ORTHO05D000373 1.5e-06 55.8 63 52.4
Glyma.01G218600 Glycine max HOM05D000425 ORTHO05D000373 1.5e-06 55.8 63 49.2
Prupe.2G209900 Prunus persica HOM05D000425 ORTHO05D000373 1.5e-06 55.8 62 43.5
Sabra10G0174200 Salix brachista HOM05D000425 ORTHO05D000373 1.5e-06 55.8 65 46.2
PGSC0003DMG400031347 Solanum tuberosum HOM05D000425 ORTHO05D000373 1.5e-06 55.8 63 49.2
Aa31LG5G20470 Aethionema arabicum HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 43.8
AL4G36430 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 46.9
AL92U10100 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 46.9
CSS0002138 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 2.0e-06 55.5 60 48.3
ECA238G4802 Erigeron canadensis HOM05D000425 ORTHO05D000373 2.0e-06 55.5 59 50.8
FAN10G2737 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 43.8
Medtr1g094620 Medicago truncatula HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 45.3
PSO063G3625 Papaver somniferum HOM05D000425 ORTHO05D000373 2.0e-06 55.5 64 45.3
A04p29800 Brassica napus HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 45.3
BolC4t28208H Brassica oleracea HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 45.3
BraA04t18442Z Brassica rapa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 45.3
CANSAT35G0074 Cannabis sativa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 60 45.0
CANSAT64G0028 Cannabis sativa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 63 47.6
FvH4_7g18870 Fragaria vesca HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 42.2
FAN01G1533 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 42.2
FAN06G2715 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 42.2
FAN06G3886 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 42.2
Glyma.20G181900 Glycine max HOM05D000425 ORTHO05D000373 2.6e-06 55.1 62 45.2
Lalb_Chr03g0042381 Lupinus albus HOM05D000425 ORTHO05D000373 2.6e-06 55.1 60 45.0
Oeu000808.1 Olea europaea HOM05D000425 ORTHO05D000373 2.6e-06 55.1 64 50.0
Solyc03g078150.3 Solanum lycopersicum HOM05D000425 ORTHO05D000373 2.6e-06 55.1 63 47.6
TAR625G0868 Trochodendron aralioides HOM05D000425 ORTHO05D000373 2.6e-06 55.1 63 49.2
TAR633G2021 Trochodendron aralioides HOM05D000425 ORTHO05D000373 2.6e-06 55.1 60 46.7
Actinidia06741 Actinidia chinensis HOM05D000425 ORTHO05D000373 3.4e-06 54.7 60 48.3
HanXRQChr07g0195031 Helianthus annuus HOM05D000425 ORTHO05D000373 3.4e-06 54.7 64 46.9
Potri.010G226000 Populus trichocarpa HOM05D000425 ORTHO05D000373 3.4e-06 54.7 64 46.9
Sabra08G0024400 Salix brachista HOM05D000425 ORTHO05D000373 3.4e-06 54.7 64 46.9
Solyc03g063040.4 Solanum lycopersicum HOM05D000425 ORTHO05D000373 3.4e-06 54.7 62 46.8
TPR.G1954 Trifolium pratense HOM05D000425 ORTHO05D000373 3.4e-06 54.7 64 43.8
GSVIVG01016234001 Vitis vinifera HOM05D000425 ORTHO05D000373 3.4e-06 54.7 64 45.3
Aqoxy1G00896 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 4.5e-06 54.3 64 43.8
AT2G39130 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 4.5e-06 54.3 60 48.3
MSTRG.384 Avicennia marina HOM05D000425 ORTHO05D000373 4.5e-06 54.3 64 45.3
Carub.0004s2118 Capsella rubella HOM05D000425 ORTHO05D000373 4.5e-06 54.3 64 43.8
CsaV3_3G040180 Cucumis sativus L. HOM05D000425 ORTHO05D000373 4.5e-06 54.3 62 46.8
Lj5g0024381 Lotus japonicus HOM05D000425 ORTHO05D000373 4.5e-06 54.3 62 41.9
Medtr7g062410 Medicago truncatula HOM05D000425 ORTHO05D000373 4.5e-06 54.3 59 47.5
Prupe.6G258200 Prunus persica HOM05D000425 ORTHO05D000373 4.5e-06 54.3 59 39.0
Prupe.7G038500 Prunus persica HOM05D000425 ORTHO05D000373 4.5e-06 54.3 63 50.8
SGA_v2.0_scaffold62G21395 Striga asiatica HOM05D000425 ORTHO05D000373 4.5e-06 54.3 63 47.6
ECA247G0054 Erigeron canadensis HOM05D000425 ORTHO05D000373 5.9e-06 53.9 63 44.4
Gohir.D04G122100 Gossypium hirsutum HOM05D000425 ORTHO05D000373 5.9e-06 53.9 60 45.0
Gorai.012G105000 Gossypium raimondii HOM05D000425 ORTHO05D000373 5.9e-06 53.9 60 45.0
Hma1.2p1_0546F.1_g176300 Hydrangea macrophylla HOM05D000425 ORTHO05D000373 5.9e-06 53.9 63 46.0
MD07G1171300 Malus domestica HOM05D000425 ORTHO05D000373 5.9e-06 53.9 66 42.4
Medtr1g050325 Medicago truncatula HOM05D000425 ORTHO05D000373 5.9e-06 53.9 61 49.2
Nn2g11172 Nelumbo nucifera HOM05D000425 ORTHO05D000373 5.9e-06 53.9 59 47.5
Oeu020826.1 Olea europaea HOM05D000158 ORTHO05D000197 5.9e-06 53.9 64 45.3
PSO339G4452 Papaver somniferum HOM05D000425 ORTHO05D000373 5.9e-06 53.9 60 46.7
QL07p048897 Quercus lobata HOM05D000425 ORTHO05D000373 5.9e-06 53.9 57 45.6
Sopen03g015320 Solanum pennellii HOM05D000425 ORTHO05D000373 5.9e-06 53.9 62 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3162 Anthoceros agrestis HOM05D000425 ORTHO05D000373 7.7e-06 53.5 62 45.2
Aqoxy7G03187 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 7.7e-06 53.5 63 47.6
arahy.Tifrunner.gnm1.ann1.3H39ZY Arachis hypogaea HOM05D000425 ORTHO05D000373 7.7e-06 53.5 60 53.3
arahy.Tifrunner.gnm1.ann1.K7T5R5 Arachis hypogaea HOM05D000425 ORTHO05D000373 7.7e-06 53.5 60 53.3
CANSAT56G4283 Cannabis sativa HOM05D000425 ORTHO05D000373 7.7e-06 53.5 64 43.8
MELO3C009757.2 Cucumis melo HOM05D000425 ORTHO05D000373 7.7e-06 53.5 57 49.1
Eucgr.A02246 Eucalyptus grandis HOM05D000425 ORTHO05D000373 7.7e-06 53.5 63 47.6
Lsat_1_v5_gn_2_112901 Lactuca sativa HOM05D000425 ORTHO05D000373 7.7e-06 53.5 60 45.0
Sp4g21480 Schrenkiella parvula HOM05D000425 ORTHO05D000373 7.7e-06 53.5 60 45.0
Zm00001eb136330 Zea mays HOM05D000425 ORTHO05D000373 7.7e-06 53.5 62 40.3


User provided reference genes

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